YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66009973
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.98
Transmembrane Helix	33	52	0.96
Non-Cytoplasmic	53	59	0.77
Transmembrane Helix	60	81	0.89
Cytoplasmic	82	100	0.94
Transmembrane Helix	101	123	0.89
Non-Cytoplasmic	124	148	0.93
Transmembrane Helix	149	171	0.91
Cytoplasmic	172	209	0.92
Transmembrane Helix	210	229	0.91
Non-Cytoplasmic	230	264	0.82
Transmembrane Helix	265	289	0.85
Cytoplasmic	290	308	0.86
Transmembrane Helix	309	330	0.79
Non-Cytoplasmic	331	377	0.83
Transmembrane Helix	378	400	0.88
Cytoplasmic	401	404	0.79
Transmembrane Helix	405	428	0.87
Non-Cytoplasmic	429	453	0.85
Transmembrane Helix	454	476	0.90
Cytoplasmic	477	492	0.89
Transmembrane Helix	493	515	0.91
Non-Cytoplasmic	516	547	0.94
Transmembrane Helix	548	570	0.76
Cytoplasmic	571	587	0.70
Transmembrane Helix	588	611	0.87
Non-Cytoplasmic	612	625	0.70
Transmembrane Helix	626	648	0.80
Cytoplasmic	649	661	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METELKEIEK EDKEVQSEKA EETKRLPPWT KQITVRGVIA SIVIGSMYSV IAMKLNLTVG  60
   61 LTPNLNISAA LLAFVFIRTW TKLLHKTGFV TTPFTRQENT MIQTCSVACY SIAVGGGFGS 120
  121 YLVGLNRKTY ELAGINTEGN SPTSIKEPGL GWMIGFLFLV CFVGLFVLIP LRKVMIIDYR 180
  181 LTYPSGTATA VLINGFHSQG DKLAKKQVRG FMKFFSMSFL WGFFQWFYTG KEECGFAQFP 240
  241 TFGLQAWKQT FYFQFSMTYV GTGMICSHLV NLSLLLGAVL SWGLMWPLIG SLKGEWFPRN 300
  301 LPDSSMKSLN GYKVFISVSL ILGDGLYNFV KVLYFSITSI YGRLKRQRQN LKIDGDEQTK 360
  361 TLDDLKQDEV FIRESIPLWM AVTGYITFAV LSIIVIPLMF PQIKWYFVLV AYVIAPSLAF 420
  421 CNAYGAGLTD INMAYNYGKV ALFMLAALSG KENGVVAALA GCGIIKSVVS VACILMQDFK 480
  481 TSYFTMASPR AMFLSQAIGT AIGCITAPLS FFLFYRAFDV GNPNGEYKVP YALIYRNMAI 540
  541 PGVEGVAALP QHCLQLCYGF FAFAVVVNMA KDLCPPKIGK WMPLPMCMAV PFLVGAYFAI 600
  601 DMCLGTLIVF LWHKLDTKKA ELMVPAVASG LICGEGMWTL PASVLALAKI SPPICMKFLA 660
  661 S