YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108752033
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGARRPL LLLLLAGLAH GASALFEDPV DPRLEPWKHP GSQPKTACTN CYCKKCCFHA  60
   61 QVCFITKGLG ISYGRKKNNL SRRAPQDSQT HQVSLSKQPA SQPRGEPTGP KESKKKVERE 120
  121 TETDPVDPGR SGDSDEELLK TVRLIKFLYQ SNPPPSPEGT RQARRNRRRR WRERQRQIRS 180
  181 ISERILSTYL GRSAEPVPLQ LPPLERATLD CNEDCGTSGT QGVGSPQILV ESPAVLESGT 240
  241 KEDPSSVVGW PTVRERMRRA EPAADGVGAA SRDLEKHGAI TSSNTAATNA ACAWLEAQEE 300
  301 EEVGFPVTPQ VPLRPMTYKA AVDLSHFLKE KGGLEGLIHS QRRQDILDLW IYHTQGYFPD 360
  361 WQNYTPGPGV RYPLTFGWCY KLVPVEPDKV EEANKGENTS LLHPVSLHGM DDPEREVLEW 420
  421 RFDSRLAFHH VARELHPEYF KNCSDPSSDY TIVLPVIGAI VVGLCLMGMG VYKIRLRCQS 480
  481 SGYQRI

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	451	0.99
Transmembrane Helix	452	472	0.93
Cytoplasmic	473	486	0.89