YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108807169, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLGKALITK EDRDGDEKKM AVKRKNIIIV ALGLLLSHHI LAQQTLAAHQ ALETDLSVQV  60
   61 NQFFQQQYSD KESQVKVVIK TPQNQWPQCD APEITLPANA RPWGNISLSV RCDGLRRFIQ 120
  121 TQVQVSGRYA VAVRRLAAGE KISAQDIQMK QGRLDTLPPG ALLDAHFAQG AVSQRQINAG 180
  181 QPLTRNMLRR LWLVKAGQDV PVLAQGDGFN VNSNGKAMNN GAAQETIRVR MPSGQIVSGT 240
  241 VADDGTIRIM L

Type	Start	End	Confidence
Cytoplasmic	1	20	0.68
Transmembrane Helix	21	42	0.58
Non-Cytoplasmic	43	251	0.99