YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108999752, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.86
Transmembrane Helix	15	33	0.91
Non-Cytoplasmic	34	82	0.92
Transmembrane Helix	83	102	0.88
Cytoplasmic	103	113	0.76
Transmembrane Helix	114	134	0.92
Non-Cytoplasmic	135	147	0.85
Transmembrane Helix	148	172	0.83
Cytoplasmic	173	188	0.78
Transmembrane Helix	189	214	0.82
Non-Cytoplasmic	215	236	0.82
Transmembrane Helix	237	260	0.87
Cytoplasmic	261	324	0.92
Transmembrane Helix	325	347	0.87
Non-Cytoplasmic	348	380	0.94
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	469	0.94
Transmembrane Helix	470	490	0.89
Non-Cytoplasmic	491	493	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPQDPSRKE VLRFAVSCRI LTLMLQALFN AIIPDHHAEA FSPPRLAPSG FVDQLVDGLL  60
   61 GGLSRWDAEH FLFIAEHGYL YEHNFAFFPG FPLALMVGTE LLRPLRGLLS LRSCLLISVA 120
  121 SLNFLFFMLA AVALHDLGCL VLHCPHQAFY AALLFCLSPA SVFLAAGYSE ALFALLTFSA 180
  181 MGQLERGRVW TSGLLFAIAT GVRSNGLVSV GFLMHSQCQG FFSSLTMLNP LRQLFKLMAS 240
  241 LFLSVFTLGL PFALFQYYAY TQFCLPGSAR PIPEPLVQLA VDKGYRIAEG NEPPWCFWDV 300
  301 PLIYSYIQDV YWNVGFLKYY ELRQVPNFLL AAPVAILVVW ATWTYVTTHP WLCLTLGLQR 360
  361 SKNNKTLEKP DLGFLSPKVF VYLVHAAVLL LFGGLCMHVQ VLTRFLGSST PIVYWFPAHL 420
  421 LQDQEPLLRS LKTVPWKPLA EDSPPGQKVP RNPIMGLLYR WKTCSPVTRY ILGYFLTYWL 480
  481 LGLLLHCNFL PWT