YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109067847
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	82	0.97
Transmembrane Helix	83	105	0.79
Non-Cytoplasmic	106	107	0.54
Transmembrane Helix	108	131	0.78
Cytoplasmic	132	137	0.67
Transmembrane Helix	138	157	0.81
Non-Cytoplasmic	158	183	0.64
Transmembrane Helix	184	206	0.86
Cytoplasmic	207	213	0.45
Transmembrane Helix	214	234	0.72
Non-Cytoplasmic	235	268	0.68
Transmembrane Helix	269	285	0.86
Cytoplasmic	286	297	0.75
Transmembrane Helix	298	317	0.74
Non-Cytoplasmic	318	344	0.73
Transmembrane Helix	345	371	0.78
Cytoplasmic	372	384	0.70
Transmembrane Helix	385	407	0.91
Non-Cytoplasmic	408	419	0.63
Transmembrane Helix	420	442	0.87
Cytoplasmic	443	479	0.77
Transmembrane Helix	480	507	0.91
Non-Cytoplasmic	508	780	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPGGRSEP PQLPEYSCSY VVSRPVYSEL AFQQQHERRL QERKTLRESL AKCCSCSRKR  60
   61 AFGVLKTLLP ILEWLPKYRV KEWLLSDIVS GVSTGLVATL QGMAYALLAA VPVGYGLYSA 120
  121 FFPILTYFIF GTSRHISVGP FPVVSLMVGS VVLSMAPNEH FLVSSSNGTV LNTTMIDTAT 180
  181 RDTARVLIAS ALTLLVGIIQ LIFGGLQIGF IVRYLADPLV GGFTTAAAFQ VLVSQLKIVL 240
  241 NVSTKNYNGV LSIIYTLVEI FQNIGDTNLA DFIAGLLTIV VCMAVKELND RFRHKIPVPI 300
  301 PIEVIVTIIA TAISYGANLE KNYNAGIVKS IPRGFLPPAL PPVSLFSEML AASFSIAVVA 360
  361 YAIAVSVGKV YATKYDYAID GNQEFIAFGI SNIFSGFFSC FVATTALSRT AVQESTGGKT 420
  421 QVAGIISAGI VMIAILALGK LLEPLQKSVL AAVVIANLKG MFMQVCDIPR LWRQNKIDAV 480
  481 IWVFTCIVSI ILGLDLGLLA GLVFGLLTVV LRVQFPSWNG LGSIPSTDIY KSTKNYKNIE 540
  541 EPQGVKILRF SSPIFYGNVD GFKKCIKSTV GFDAIRVYNK RLKALRKIQK LIKNGQLRAT 600
  601 KNGIISDAGS TNNAFEPDED IEDPEELDTP TKEIEIQVDW NSELPVKVNV PKVPIHSLVL 660
  661 DCGAISFLDV VGVRSLRVIV KEFQRIDVNV YFASLQDYVI EKLEQCGFFD DNIRKDTFFL 720
  721 TVHDAILYLQ NQVKSQEGQD SILETITLIQ DCKDTLELIE TELTEEELDV QDEAMRTLAS 780
  781