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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109073940
Protein type: Transmembrane
Type Confidence: 0.87
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAAGIRAPE AAGADGTRLV PGGIPRLRRR GRPEESPAAV AALRGAGERR AAGAQLRFHP  60
   61 APPRRPHPAS TPGPAWGWLR RRRWAALLVL GLLVAGAADG CELVPRHLRG RRATGSSTTA 120
  121 ASSPAAAAGD SPALTTDPCM SLSPPCFTEE DRFSLEALQT IHKQMDDDKD GGIEVEESDE 180
  181 FIREDMKYKD ATNKHSHLHR EDKHITIEDL WKRWKTSEVH NWTLEDTLQW LIEFVELPQY 240
  241 EKNFRDNNVK GTTLPRIAVH EPSFMISQLK ISDRSHRQKL QLKALDVVLF GPLTRPPHNW 300
  301 MKDFILTVSI VIGVGGCWFA YTQNKTSKEH VAKMMKDLES LQTAEQSLMD LQERLEKAQE 360
  361 ENRNVAVEKQ NLERKMMDEI NYAKEEACRL RELREGAECE LSRRQYAEQE LEQVRMALKK 420
  421 AEKEFELRSS WSVPDALQKW LQLTHEVEVQ YYNIKRQNAE MQLAIAKDEA EKIKKKRSTV 480
  481 FGTLHVAHSS SLDEVDHKIL EAKKALSELT TCLRERLFRW QQIEKICGFQ IAHNSGLPSL 540
  541 TSSLYSDHSW VVMPRVSIPP YPIAGGVDDL DEDTPPIVSQ FPGTMAKPPG SLARSSSLCR 600
  601 SRRSIVPSSP QPQRAQLAPH APHPSQPRHP HHPQLTPHSL PSPDPDILSV SSCPALYRNE 660
  661 EEEEAIYFSA EKQWEVPDTA SECDSLNSSI GRKQSPPLSL EIYQTLSPRK ISRDEVSLED 720
  721 SSRGDSPVTA DVSWGSPDSV GLTETKSMIF SPASKVYNGI LEKSCSMNQL SSGIPVPKPR 780
  781 HTSCSSAGND SKPVQEAPSV ARISSIPHDL CHNGEKSKKS SKIKSLFKKK SK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle