YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109074664
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRPARVPST SRFLNPYVVC FIVVAGVVIL AVTIALLVYF LAFDQKSYFY RSSFQLLNVE  60
   61 YNSQLNSPAT QEYRTLSGRI ESLITRTFKE SNLRNQFMRA HVVKLSQDGS GVRADVVMKF 120
  121 RFTRNNNGAS MKSRIESVLQ QMLNNSGNLE INSSTEITSL TDQAAANWLI NECGAGPDLI 180
  181 TLSEQRIIGG TEAEEGSWPW QVSLRVNNAH HCGGSLISNT WILTAAHCFR SNSNPREWIA 240
  241 TFGISTTNPR LRMRVRSILI HNNYISATHE NDIALVRLEN SVTFTRDIHS VCLPAATQNI 300
  301 PLGSTAYVTG WGAQEYAGPT VSELRQAPVR IISNDVCNAP YSYNGGILPG MLCAGVPQGG 360
  361 VDACQGDSGG PLVQEDSRRL WFLVGIVSWG DQCGLPDRPG VYTRVTTYRD WIRQRTGI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.92
Transmembrane Helix	17	43	0.89
Non-Cytoplasmic	44	418	0.98