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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109080523
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.28
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVFRDTRE KEMAPRVLRV RRSARPLRSP VVPLATRIRP RPACRVPRRA QACCTLSPRA  60
   61 AAVGRGFRAP AGRFRPLTAP PGFSSQGLSD TSPDLSSRSS SRVRFSSRES VPETSRSEPM 120
  121 SEMSGATTSL ATVALDPPSD RTSHPQDVTE DPSQNSITGE HSQLLDDGHK KARNAYLNNS 180
  181 NYEEGDEYFD KNLALFEEEM DTRPKVSSLL SRMANYTNLT QGAKEHEEAE NITEGKKKPT 240
  241 KTPQMGTFMG VYLPCLQNIF GVILFLRLTW VVGTAGVLQA FAIVLICCCC TMLTAISMSA 300
  301 IATNGVVPAG GSYFMISRAL GPEFGGAVGL CFYLGTTFAA AMYILGAIEI FLVYIVPRAA 360
  361 IFRSDDALKE SAAMLNNMRV YGTAFLVLMV LVVFIGVRYV NKFASLFLAC VIVSILAIYA 420
  421 GAIKSSFAPP HFPVCMLGNR TLSSRHIDVC SKTKESNNMT VPSKLWGFFC NSSQFFNVTC 480
  481 DEYFVHNNVT SIQGIPGLAS GIITENLWGN YLPKGEIIEK PSAKSSDVLG SLNHEYVLVD 540
  541 ITTSFTLLVG IFFPSVTGIM AGSNRSGDLK DAQKSIPIGT ILAILTTSFV YLSNVVLFGA 600
  601 CIEGVVLRDK FGDAVKGNLV VGTLSWPSPW VIVIGSFFST CGAGLQSLTG APRLLQAIAK 660
  661 DNIIPFLRVF GHSKANGEPT WALLLTAAIA ELGILIASLD LVAPILSMFF LMCYLFVNLA 720
  721 CALQTLLRTP NWRPRFRYYH WALSFMGMSI CLALMFISSW YYAIVAMVIA GMIYKYIEYQ 780
  781 GAEKEWGDGI RGLSLSAARF ALLRLEEGPP HTKNWRPQLL VLLKLDEDLH VKHPRLLTFA 840
  841 SQLKAGKGLT IVGSVIVGNF LENYGEALAA EQTIKHLMEA EKVKGFCQLV VAAKLREGIS 900
  901 HLIQSCGLGG MKHNTVVMGW PNGWRQSEDA RAWKTFIGTV RVTTAAHLAL LVAKNISFFP 960
  961 SNVEQFSEGN IDVWWIVHDG GMLMLLPFLL KQHKVWRKCS IRIFTVAQLE DNSIQMKKDL1020
 1021 ATFLYHLRIE AEVEVVEMHD SDISAYTYER TLMMEQRSQM LRHMRLSKTE RDREAQLVKD1080
 1081 RNSMLRLTSI GSDEDEETET YQEKVHMTWT KDKYMASRGQ KAKSMEGFQD LLNMRPDQSN1140
 1141 VRRMHTAVKL NEVIVNKSHE AKLVLLNMPG PPRNPEGDEN YMEFLEVLTE GLERVLLVRG1200
 1201 GGSEVITIYS 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle