YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109092414
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.93
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	278	0.99
Transmembrane Helix	279	302	0.89
Cytoplasmic	303	346	0.96
Transmembrane Helix	347	370	0.88
Non-Cytoplasmic	371	377	0.82
Transmembrane Helix	378	399	0.92
Cytoplasmic	400	414	0.87
Transmembrane Helix	415	437	0.91
Non-Cytoplasmic	438	448	0.76
Transmembrane Helix	449	470	0.91
Cytoplasmic	471	500	0.91
Transmembrane Helix	501	523	0.89
Non-Cytoplasmic	524	533	0.79
Transmembrane Helix	534	559	0.87
Cytoplasmic	560	567	0.91
Transmembrane Helix	568	590	0.91
Non-Cytoplasmic	591	606	0.89
Transmembrane Helix	607	631	0.87
Cytoplasmic	632	643	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAMDWLPW SLLLFSLMCE TSAFYVPGVA PINFHQNDPV EIKAVKLTSS RTQLPYEYYS  60
   61 LPFCQPSKIT YKAENLGEVL RGDRIVNTPF QVLMNSEKKC EVLCSQSNKP VTLTVEQSRL 120
  121 VAERITEDYY VHLIADNLPV ATRLELYSNR DSDDKKKEKD VQFEHGYRLG FTDVNKIYLH 180
  181 NHLSFILYYH REDMEEDQEH TYRVVRFEVI PQSIRLEDLK ADEKSSCTLP EGTNSSPQEI 240
  241 DPTKENQLYF TYSVHWEESD IKWASRWDTY LTMSDVQIHW FSIINSVVVV FFLSGILSMI 300
  301 IIRTLRKDIA NYNKEDDIVR DTMEESGWKL VHGDVFRPPQ YPMILSSLLG SGIQLFCMIL 360
  361 IVIFVAMLGM LSPSSRGALM TTACFLFMFM GVFGGFSAGR LYRTLKGHRW KKGAFCTATL 420
  421 YPGVVFGICF VLNCFIWGKH SSGAVPFPTM VALLCMWFGI SLPLVYLGYY FGFRKQPYDN 480
  481 PVRTNQIPRQ IPEQRWYMNR FVGILMAGIL PFGAMFIELF FIFSAIWENQ FYYLFGFLFL 540
  541 VFIILVVSCS QISIVMVYFQ LCAEDYRWWW RNFLVSGGSA FYVLVYAIFY FVNKLDIVEF 600
  601 IPSLLYFGYT ALMVLSFWLL TGTIGFYAAY MFVRKIYAAV KID