YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109094007
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRGSGTVN ACLLSSVLRA AAARGASTNE PSTGRMERLQ PDSMPQDLSE ALKEATKEVH  60
   61 TQAENAEFMR NFQKGQVTRE GFKLVMASLH HIYVALEEEI ERNKESPVFA PVYFPEELHR 120
  121 KATLEQDLAF WYGPRWQEVI PYTLAMQRYV KRLHEVGRTE PELLVAHAYT RYLGDLSGGQ 180
  181 MLKKIAQKAL DLPSSGEGLA FFTFPNIASA TKFKQLYRSR MNSLEMTPSV RQRVIEEAKT 240
  241 AFLLNIQLFE ELQELLTHDT KDQSPSQAPG LRQRASNKAQ DSAPVETPRG KPQLNTRSQA 300
  301 PLLRWILMFS FLVATVAVGL YAM

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	301	0.98
Transmembrane Helix	302	322	0.93
Cytoplasmic	323	323	0.94