YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|212727033, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAWEALFLL WATAEATKDC PIPCTCRALE TMGLWVDCRG RGLTALPTLP ARTRHLLLAN  60
   61 NSLQSVPPGA FDHLPQLQTL DVTQNPWHCD CSLTYLRLWL EDRTPEALLQ VRCASPSLAA 120
  121 HGPLGQLTGY QLGSCGWQLQ ASWVRSGVLW DVALVAVAAL GLALLAGLLC ATTEALD

Type	Start	End	Confidence
Signal Peptide	1	16	0.60
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	146	0.66
Transmembrane Helix	147	171	0.84
Cytoplasmic	172	177	0.55