YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109103934
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSTSVNSS VQGNGVLNSR DAARHTAGAK RYKYLRRLFR FRQMDFEFAA WQMLYLFTSP  60
   61 QRVYRNFHYR KQTKDQWARD DPAFLVLLSI WLCVSTIGFG FVLDMGFFET IKLLLWVVFI 120
  121 DCVGVGLLIA TLMWFISNKY LVKRQSRDYD VEWGYAFDVH LNAFYPLLVI LHFIQLFFIN 180
  181 HVILTDTFIG YLVGNTLWLV AVGYYIYVTF LGYSALPFLK NTVILLYPFA PLILLYGLSL 240
  241 ALGWNFTHTL CSFYKYRVK

Type	Start	End	Confidence
Cytoplasmic	1	82	0.72
Transmembrane Helix	83	103	0.93
Non-Cytoplasmic	104	112	0.47
Transmembrane Helix	113	136	0.91
Cytoplasmic	137	156	0.55
Transmembrane Helix	157	179	0.79
Non-Cytoplasmic	180	187	0.43
Transmembrane Helix	188	213	0.78
Cytoplasmic	214	222	0.44
Transmembrane Helix	223	244	0.87
Non-Cytoplasmic	245	259	0.53