YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109106274, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	39	0.83
Non-Cytoplasmic	40	75	0.98
Transmembrane Helix	76	97	0.93
Cytoplasmic	98	105	0.86
Transmembrane Helix	106	125	0.94
Non-Cytoplasmic	126	133	0.79
Transmembrane Helix	134	155	0.93
Cytoplasmic	156	164	0.78
Transmembrane Helix	165	185	0.91
Non-Cytoplasmic	186	192	0.72
Transmembrane Helix	193	215	0.90
Cytoplasmic	216	302	0.97
Transmembrane Helix	303	321	0.94
Non-Cytoplasmic	322	354	0.92
Transmembrane Helix	355	377	0.85
Cytoplasmic	378	419	0.94
Transmembrane Helix	420	440	0.89
Non-Cytoplasmic	441	449	0.65
Transmembrane Helix	450	472	0.81
Cytoplasmic	473	479	0.67
Transmembrane Helix	480	499	0.87
Non-Cytoplasmic	500	510	0.74
Transmembrane Helix	511	534	0.89
Cytoplasmic	535	560	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTLQQAYR RRWWMACTAV LENLFFSAVL LGWGSLLIML KNEGFYSSMC PAENSTNSTQ  60
   61 DEQRRWPGCD RQDEMLNLGF TIGSFVLSAT TLPLGILMDR FGPRPVRLVG SACFAASCTL 120
  121 MALASRDVEV LSPLIFLALS LNGFGGICLT FTSLTLPNMF GNLRSTLMAL MIGSYASSAI 180
  181 TFPGIKLIYD AGVAFVVIMF TWSGLACLIF LNCALNWPIE AFPAPEEVNY TKKIKLSGLA 240
  241 LDHKVTGDRF YTHVTTVGQR LSQKAPSLED GSDAFMSPQD VRGTSENPPE RSVPFRKSLC 300
  301 SPIFLWSLLT MGMTQLRIIF YMAAMNKMLE YLVTGGQEHE MNEQQQQKVA ETVGFYSSIF 360
  361 GAMQLLCLLT CPLIGYIMDW RIKDCVDAPT QGTVLGDARD GVATKSIRPR YCKIQKLTNA 420
  421 INAFTLTNLL LVGFGVTCLI NNLHLQFVTF VLHTIVRGFF HSACGSLYAA VFPSNHFGTL 480
  481 TGLQSLISAV FALLQQPLFM AMVGPLKGEP FWVNLGLLLF SLLGFLLPSY LFYYRARLQK 540
  541 EYTANGMGPL KVLSGSEVTA