YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109107482
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKPMFLVER SLTSYSSLKS PPLHQKHARS MLCFSPEILN SVADAGNDSR WWSLMKLSPV  60
   61 NCTSPLSLFV QDDILAKCTK DGPAPGASGS RVRAPRPRPF SGSGPAAKVP ACGVGPSLCP 120
  121 PGRACPRLGR FPVGQAELQG GATSLRARGG SRAPAPGQPQ FDDMLGVSLR DPSLLLTITV 180
  181 IGVTVLVLVL KSMNSRKREP ITLQDPEAKY PLPLIEKEKI SHNTRRFRFE LPSPDHVLGL 240
  241 PVGNYVQLLA KIDNELVVRA YTPVSSDDDR GFVDLIIKIY FKNVHPQYPE GGKMTQYLEN 300
  301 MKIGDTIFFR GPKGRLFYHG PGNLGIRPDH MSEPKKKLAH HLGMIAGGTG ITPMLQLIRH 360
  361 ITKDPSDSTR MSLIFANQTE EDILVRKELE EIARTHPDQF DLWYTLDRPP IGWKYSSGFV 420
  421 TADMIKEHLP PPGKSTLILV CGPPPLIQTA AHPNLEKLGY TQDMIFTY

Type	Start	End	Confidence
Non-Cytoplasmic	1	173	0.68
Transmembrane Helix	174	193	0.69
Cytoplasmic	194	337	0.49
Transmembrane Helix	338	355	0.33
Non-Cytoplasmic	356	468	0.79