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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109120359
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRRGKGKR ARSKDPEPAG AALPGPRRQH LPTRARPRAT RPRRPPPLSV RGRLGARQAD  60
   61 TPLRSSQAAA AARSGLRDSG AAASGRLAAR ITRGSGCLLA GAARRALGAR VRRRRRTRGR 120
  121 TWAAGSLAAG SAGTGRAGRV ALTMVFCWDT GVLLCALLGC LLLTGSSSGS KLKGPELSLK 180
  181 GTQHVTQAGQ TLHLQCRGEA AHQWSLPETV SKESKRLSIT KSACGRNGKQ FCSTLTLNAA 240
  241 QANHTGFYSC KYLAVPTSKK KETESAIYIF ISDTGRPFVE MYSEIPEIIH MTEGRELIIP 300
  301 CRVTSPNITV TLKKFPLDTL IPDGKRVIWD SRKGFIISNA TYKEIGLLTC EATVNGHLYK 360
  361 TNYLTHRQTN TIIDVQISTP RPVKLLRGHT LILNCTATTP LNTRVQMTWS YPDEKNKRAS 420
  421 VRRRIDQSNS HANIFYSVLT IDKVQNKDKG LYTCRVRSGP SFKYVNTSVH IYDKAFITVK 480
  481 HRKQQVLETV AGKRSYRLSM KVKAFPSPEV VWLKDGLPAT EKSARYLTRG YSLIIKDVTE 540
  541 EDAGNYTILL SIKQSNVFKN LTATLIVNVK PQIYEKAVSS FPDPALYPLG SRQILTCTAY 600
  601 GIPRPTIKWC WRPCNHNHSE ARYDFCSNNE ESFILDPDSN IGNRIESITQ RMAIIEGKNK 660
  661 TASTLVVADS RISGIYSCIA SNKVGTVGRN ISFYITDVPN GFHVNLEKMP TEGEDLKLSC 720
  721 TVNKFLYRDV TWILLRTVNN RTMHYSISKQ KMAITKEHSI TLNLTIMNVS LEDSGTYACR 780
  781 ARNVYTGEEI LQKKEVTIRD QEAPYLLRNL SDHTVAISSS TTLDCHANGA PEPQITWFKN 840
  841 NHKIQQEPGI ILGPGSSTLF IERVTEEDEG VYHCKATNQK GSVESSAYLT VQGTSDKSNL 900
  901 ELITLTCTCV AATLFWLLLT LFIRKMKRSS SEIKTDYLSI IMDPDEVPLD EQCERLPYDA 960
  961 SKWEFARERL KLGKSLGRGA FGKVVQASAF GIKKSPTCRT VAVKMLKEGA TASEYKALMT1020
 1021 ELKILTHIGH HLNVVNLLGA CTKQGGPLMV IVEYCKYGNL SNYLKSKRDL FFLNKDAALH1080
 1081 MEPKKEKMEP GLEQGKKPRL DSVTSSESFA SSGFQEDKSL SDVEEEEDSD GFYKEPITME1140
 1141 DLISYSFQVA RGMEFLSSRK CIHRDLAARN ILLSENNVVK ICDFGLARDI YKNPDYVRKG1200
 1201 DTRLPLKWMA PESIFDKIYS TKSDVWSYGV LLWEIFSLGG SPYPGVQMDE DFCSRLREGM1260
 1261 RMRAPEYSTP EIYQIMLDCW HRDPKERPRF AELVEKLGDL LQANVQQDGK DYIPINAILT1320
 1321 GNSGFTYSTP AFSEDFFKEG ISAPKFNSES SDDVRYVNAF KFMSLERIKT FEELLPNATS1380
 1381 MFDDYQGDSS TLLASPMLKR FTWTDSKPKA SLKIDLRVTS KSKESGLSDA SRPSFCHSSC1440
 1441 GHISEGKRRF TYDNAELERK IACCSPPPDY NSVVLYSTPP V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle