YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109122562
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEGLDWLL VPLHQLVSWG AAAAMVFGGV VPYVPQYRDI RRTQNADGFS TYVCLVLLVA  60
   61 NILRILFWFG RRFESPLLWQ SAIMILTMLL MLKLCTEVRV ANELNARRRS FAAADSKDEE 120
  121 VKVAPRRSFL DFDPHHFWQW SSFSDYVQCV LAFTGVAGYI TYLSIDSTLF VETLGFLAVL 180
  181 TEAMLGVPQL YRNHRHQSTE GMSIKMVLMW TSGDAFKTAY FLLKGAPLQF SVCGLLQVLV 240
  241 DLAILGQAYA FARHPQKPAL HAVHPAGTKA L

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.85
Transmembrane Helix	16	35	0.93
Cytoplasmic	36	47	0.84
Transmembrane Helix	48	68	0.95
Non-Cytoplasmic	69	76	0.80
Transmembrane Helix	77	96	0.91
Cytoplasmic	97	143	0.87
Transmembrane Helix	144	163	0.82
Non-Cytoplasmic	164	168	0.67
Transmembrane Helix	169	191	0.72
Cytoplasmic	192	205	0.70
Transmembrane Helix	206	221	0.46
Non-Cytoplasmic	222	227	0.44
Transmembrane Helix	228	251	0.61
Cytoplasmic	252	271	0.72