YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109123815
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	257	0.64
Transmembrane Helix	258	279	0.89
Cytoplasmic	280	317	0.95
Transmembrane Helix	318	338	0.84
Non-Cytoplasmic	339	344	0.71
Transmembrane Helix	345	368	0.85
Cytoplasmic	369	388	0.85
Transmembrane Helix	389	409	0.79
Non-Cytoplasmic	410	416	0.66
Transmembrane Helix	417	435	0.82
Cytoplasmic	436	443	0.81
Transmembrane Helix	444	461	0.96
Non-Cytoplasmic	462	467	0.75
Transmembrane Helix	468	487	0.93
Cytoplasmic	488	500	0.85
Transmembrane Helix	501	520	0.91
Non-Cytoplasmic	521	538	0.80
Transmembrane Helix	539	565	0.79
Cytoplasmic	566	586	0.70
Transmembrane Helix	587	611	0.59
Non-Cytoplasmic	612	689	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAPASPQQ IRDRLLQAID PQSNIRNMVA VLEVISSLEK YPITKEALEE TRLGKLINDV  60
   61 RKKTKNEELA KRAKKLLRSW QKLIEPAHQH EAALRGLAAA RAGASKPAHR PPRADPGYHT 120
  121 GRSRQNPGQP VAGGERVSGH TGFVCLMVIC HKRDLQKQGA LVNVQYLDFC VLRTQKGATL 180
  181 LFGPISQKNL DPNSRNAGRQ DRALCFEVHL LACCCIWEDL HILFIQGHIK EPHAQTPTLQ 240
  241 SPPRSCSPVP LEFWLPVTGT AHVSGGTAWM QVSVPFFRFR PRLRPRRKRI YSGLGLHSRR 300
  301 GGWRVGRRAS SSSGAREGAR VAALCLLWYA LSAGGNVVNK VILSAFPFPV TVSLCHILAL 360
  361 CAGLPPLLRA WRVPHPSSGP LLPPRFYPRY VLPLAFGKYF ASVSAHVSIW KVPVSYAHTV 420
  421 KATMPIWVVL LSRIIMKEKQ STKVYLSLIP IISGVLLATV TELSFDMWGL VSALAATLCF 480
  481 SLQNIFSKKV LRDSRIHHLR LLNILGCHAV FFMIPTWVLV DLSAFLVSSD LTYVYQWPWT 540
  541 LLLLAVSGFC NFAQNVIAFS ILNLVSPLSY SVANATKRIM VITVSLIMLR NPVTSTNVLG 600
  601 MMTAILGVFL YNKTKYDANQ QARKHLLPVT TADLSSKERH RSPLEKPHNG LLFPQHGDYQ 660
  661 YGRNNILTDH FQYSRQSYPN SYSLNRYDV