YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109129987
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRGTAGDG HRASATPSRV SPGSLSTCRT HAHNICMVSD FFYPNMGGVE SHIYQLSQCL  60
   61 IERGHKVIIV THAYGNRKGI RYLTNGLKVY YLPLKVMYNQ STATTLFHSL PLLRYIFVRE 120
  121 RVTIIHSHSS FSAMAHDALF HAKTMGLQTV FTDHSLFGFA DVSSVLTNKL LTVSLCDTNH 180
  181 IICVSYTSKE NTVLRAALNP EIVSVIPNAV DPTDFTPDPF RRHDSITIVV VSRLVYRKGI 240
  241 DLLSGIIPEL CQKYPDLNFI IGGEGPKRII LEEVRERYQL HDRVRLLGAL EHKDVRDVLV 300
  301 QGHIFLNTSL TEAFCMAIVE AASCGLQIVS TRVGGIPEVL PEDLIILCEP SVKSLCEGLE 360
  361 KAVLQLKSGT LLAPENIHNI VKTFYTWRNV AERTEKVYDR VSMEAVLPMD KRLDRLISHC 420
  421 GPVTGYIFAL LAVFSFLFLV FLRWMTPDSI IDVAVDATGP QGAWTNNYSH SKREGENSEI 480
  481 SKTR

Type	Start	End	Confidence
Non-Cytoplasmic	1	421	0.76
Transmembrane Helix	422	442	0.91
Cytoplasmic	443	484	0.71