YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109132388
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.77
Non-Cytoplasmic	43	71	0.97
Transmembrane Helix	72	91	0.94
Cytoplasmic	92	101	0.79
Transmembrane Helix	102	121	0.91
Non-Cytoplasmic	122	181	0.94
Transmembrane Helix	182	199	0.87
Cytoplasmic	200	210	0.79
Transmembrane Helix	211	233	0.91
Non-Cytoplasmic	234	251	0.75
Transmembrane Helix	252	271	0.87
Cytoplasmic	272	282	0.72
Transmembrane Helix	283	305	0.78
Non-Cytoplasmic	306	323	0.79
Transmembrane Helix	324	348	0.90
Cytoplasmic	349	356	0.77
Transmembrane Helix	357	376	0.69
Non-Cytoplasmic	377	377	0.51
Transmembrane Helix	378	399	0.77
Cytoplasmic	400	415	0.59
Transmembrane Helix	416	436	0.66
Non-Cytoplasmic	437	443	0.64
Transmembrane Helix	444	466	0.82
Cytoplasmic	467	479	0.81
Transmembrane Helix	480	499	0.90
Non-Cytoplasmic	500	510	0.70
Transmembrane Helix	511	533	0.84
Cytoplasmic	534	713	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARRGWRRAP LRRGVGGGPR ARRLMRPLWL LLAVGVFDWA GASDGGGGEA RAMDEEIVSE  60
   61 KQAEESHRQD SANLLIFILL LTLTILTIWL FKHRRARFLH ETGLAMIYGL LVGLVLRYGI 120
  121 HVPSDVNNVT LSCEVQSSPT TLLVNVSGKF YEYTLKGEIS SHELNNVQDN EMLRKVTFDP 180
  181 EVFFNILLPP IIFYAGYSLK RRHFFRNLGS ILAYAFLGTA ISCFVIGSIM YGCVTLMKVT 240
  241 GQLAGDFYFT DCLLFGAIVS ATDPVTVLAI FHELQVDVEL YALLFGESVL NDAVAIVLSS 300
  301 SIVAYQPAGD NSHTFDVTAM FKSIGIFLGI FSGSFAMGAA TGVVTALVTK FTKLREFQLL 360
  361 ETGLFFLMSW STFLLAEAWG FTGVVAVLFC GITQAHYTYN NLSTESQHRT KQLFELLNFL 420
  421 AENFIFSYMG LTLFTFQNHV FNPTFVVGAF VAIFLGRAAN IYPLSLLLNL GRRSKIGSNF 480
  481 QHMMMFAGLR GAMAFALAIR DTATYARQMM FSTTLLIVFF TVWVFGGGTT AMLSCLHIRV 540
  541 GVDSDQEHLV NMLRDQPGQH GESGVRDQRT TKAESAWLFR MWYNFDHNYL KPLLTHSGPP 600
  601 LTTTLPACCG PIARCLTSPQ AYENQEQLKD DDSDLILNDG DISLTYGDST VNTESATSSA 660
  661 PRRFMGNSSE DALDRELAFG DHELVIRGTR LVLPMDDSEP PLNLLDNTRH GPA