YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109457568
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKCKRNFNS ERFVLNHTCV AFTETQVMGV PGGGLCAALP AQIPSGNTVA SISLLPSGMP  60
   61 DQDRFGPVLP VWHLSCSGGD PTVETRGDDT RPPARVGRTP APPAQVAGAL GTAAVPGDAP 120
  121 RLLRSALPRA APRFPRRRAQ RSSFSALPTS SPAGRANMAL VPCQVLRVAI LLSYCSILCN 180
  181 YKAIEMPSHQ TYGGSWKFLT FIDLVIQAVF FGICVLTDLS SLLTRGSGNQ EQERQLRKLI 240
  241 SLRDWTLAVL AFPVGVFVVA VFWTIYAYDR EMIYPRLLDN FIPGWLNHGM HTTVLPFILI 300
  301 EMRTSHHQYP SRSSGLAAIC TFSVGYILWV CWIHHVTGMW VYPFLEHIGS GARIIFFGST 360
  361 TLLMNSLYLL GEALNSYIWD APRSLEEEKE KPKLE

Type	Start	End	Confidence
Cytoplasmic	1	162	0.82
Transmembrane Helix	163	184	0.76
Non-Cytoplasmic	185	203	0.84
Transmembrane Helix	204	224	0.90
Cytoplasmic	225	244	0.92
Transmembrane Helix	245	267	0.93
Non-Cytoplasmic	268	283	0.89
Transmembrane Helix	284	302	0.88
Cytoplasmic	303	314	0.79
Transmembrane Helix	315	336	0.91
Non-Cytoplasmic	337	350	0.83
Transmembrane Helix	351	371	0.86
Cytoplasmic	372	395	0.89