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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109462829, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGAGQSPR ARAWAGVTGG PGSFGTARVT ALGSAALGSA ARSAAARSPA PPPPRGRSAA  60
   61 AAPELEAKAT KDVERNLSRD LVQEEEQLME EKKRKKDDKK KKEAAQKKAT EQKIKVPEQI 120
  121 KPSVSQPQPA NSDNGTSTAT STNNNAKRAT ASNQQPPPPP QQPQQQQQQQ QQQQEQQQQQ 180
  181 QQQQQQQQQP QALPRYPREV PPRFRHQEHK QLLKRGQHFP VIAANLGSAV KVLNSQSESS 240
  241 AVTNQQPQNN GEVQNSKSQS DINHNTSGSH YENCQRGPVS STSDCSTSCK NAVNDLLEKE 300
  301 AWPSAPGSDP ELASECIDAD SASNSESERN ITVMASGNTG GEKDGLRNST GLGPQSKFVV 360
  361 GSSSNNVGHG SSTGPWGFPH GAIISTCQVS VDAPESKPES SNSRMNAWGT VSSSSNGGLN 420
  421 PSTLNSASNH GAWPVLENNG LALKGPVGSG NSGINIQCST IGQMPNNQSI NSKVSGSSTH 480
  481 GTWGSLQETC EPEVSGSQKV SFSGQPQNIT TETTGPNNTT NFMTSSLPNS GSVQNNELPT 540
  541 SNPGAWRVST MNHPQIQAPS VLNGTSLSHL SNGESKTGGS YGTTWGAYGS NYSGDKCAGP 600
  601 NGQANGDTVN ATLMQPGING PMGTNFQVST NKGGGVWEPG TVNSQSSPWG SGNGANSGGS 660
  661 RRGWGSPAQN TGTSLSSVEW NKLPSNQHSN DSANGNGSKK LTNGWKSTEE DDQGSGTSQT 720
  721 NEQNSVWAKA GGTVESDGSA ESTGRLEEKV TGESQSRDRR KIDQHTLLQS IVNRTDLDPR 780
  781 VLSNSGWGQT PIKQNTAWDT ETSPRGERKT DNGTEAWGSS ATQTFNSGAC TDKTSPNSND 840
  841 TSSVSGWGDP KPTLRWGDSK GSNCQGGWED DSAATGMIKS NQWGHCKEDK SAWNDSQKNK 900
  901 QGWGDGQKSS QGWSVSASDN WGESSRSNHW GEANKKSSSG GSDSDRSISG WNELGKTSSF 960
  961 TWGNNINPNN SSGWDESSKP NSSQGWGDPP KCNQSLGWGD SSKPVSSPDW NKQQDIVGSW1020
 1021 GIPPATSKPP GTGWLGGPIP APAKEEEPTG WEEPSPESIR RKMEIDDGTS AWGDPSKYNY1080
 1081 KNVNMWNKNI PEGSSRSDQQ AQMHRLLPAA SAISSKETSS GSGWGEPWAE PSTPATTVDN1140
 1141 GTSAWGKPID SGPSWGEPIT AASSASTWGS NSVGPQSLSK SGPKSMQDGW CGEDTPLPGS1200
 1201 RPTGWEEEED VEIGMWNSSS SQELNSSLNW PPYTKKMSSK GLSGKKRRRE RGMMKGGNKQ1260
 1261 EDAWINPFVK QFSNISFSRD SPEENVQSNK MDLSGGMLQD KRMEIDKHSL NIGDYNRAVG1320
 1321 KGPGSRPQIS KESSMERNPY FDKDGIVADE SQNMQFMSSQ SMKLPPSNNA LPNQALGSIA1380
 1381 GLGTQNLNSV RQNGNPSMFG VGNTAAQPRG MQQPPAQPLS SSQPNLRAQV PPPLLSPQVP1440
 1441 VSLLKYAPNN GGLNPLFGPQ QVAMLNQLSQ LNQLSQISQL QRLLAQQQRA QSQRSVPSAN1500
 1501 RQQQDQQGRP LSVQQQMMQQ SRQLDPSLLV KQQTPPSQQP LHQPAMKSFL DNVMPHTTPE1560
 1561 LQKGPSPVNA FSSFPIGLNS NLNVNMDMNS IKEPQSRLRK WTTVDSMSVN TSLDQNSSKH1620
 1621 GAISSGFRLE ESPFVPYDFM NSSTSPASPP GSIGDGWPRA KSPNGSSSVN WPPEFRPGEP1680
 1681 WKGYPNIDPE TDPYVTPGSV INSLSINTVR EVDHLRDRNS GSSSSLNTTL PSTSAWSSIR1740
 1741 ASNYNVPLSS TAQSTSARNS DSKLTWSPGS VTNTSLAHEL WKVPLPPKNI TAPSRPPPGL1800
 1801 TGQKPPLSTW DNSPLRVGGG WGNSDARYTP GSSWGESSSG RITNWLVLKN LTPQIDGSTL1860
 1861 RTLCMQHGPL ITFHLNLPHG NALVRYSSKE EVVKAQKSLH MCVLGNTTIL AEFASEEEIS1920
 1921 RFFAQSQSLT PSPGWQSLGS SQSRLGSLDC SHSFSSRTDL NHWNGAGLSG TNCGDLHGTS1980
 1981 LWGTPHYSTS LWGPPSSSDP RGISSPSPIN AFLSVDHLGG GGESM

YRC Informatics Platform - Version 3.0
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