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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109459395, gi...
Protein type: Transmembrane
Type Confidence: 0.74
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNHAPFSST DLPNLILFRR RACRAVPAVI VSAFGRISAF GGISLGFRAD LLGFRADLLG  60
   61 FRADLAFRAA GSAFGPVSAV APVSPVLETR ELSCFGPRAP QPFSTVAMSR FFTTGSDSES 120
  121 ESSLSGEELV TKPVSGNYGK QPLLLSEDEE DTKRVVRSAK DKRFEELTNL IRTIRNAMKI 180
  181 RDVTKCLEEF ELLGKAYGKA KSIVDKEGVP RFYVRILADL EDYLNELWED KEGKKKMNKN 240
  241 NAKALSTLRQ KIRKYNRDFE SHITNYKQNP EQSADEDAEK NEEDSEGSSD EDEDDDGVSG 300
  301 TAFLKKKPDS SGESRKFHKK MEDDDEDSED SEDEEWDTSS TSSDSDSEEE EGKQTVLASK 360
  361 FLKKAPTTEE DKKAAEKKRE DKAKKKHDRK SKRMDEEEED NEGGEWERVR GGVPLVKEKP 420
  421 KMFAKGTEIT HAVVIKKLNE ILQVRGKKGT DRATQIELLQ LLVQIASENN LGVGVIVKIK 480
  481 FNIIASLYDY NPNLATYMKP EMWQMCLDCI NELMDTLVAH SNIFVGENIL EESENLHNFD 540
  541 QPLRVRGCIL TLVERMDEEF TKIMQNTDPH SQEYVEHLKD EAQVCAIIER VQRYLEEKGT 600
  601 TEEICQIYLR RILHTYYKFD YKAHQRQLTP PEGSSKSEQD QAENEGEDSA VLMERLCKYI 660
  661 YAKDRTDRIR TCAILCHIYH HALHSRWYQA RDLMLMSHLQ DNIQHADPPV QILYNRTMVQ 720
  721 LGICAFRQGL TKDAHNALLD IQSSGRAKEL LGQGLLLRSL QERNQEQEKV ERRRQVPFHL 780
  781 HINLELLECV YLVSAMLLEI PYMAAHESDA RRRMISKQFH HQLRVGERQP LLGPPESMRE 840
  841 HVVAASKAMK MGDWKTCHSF IINEKMNGKV WDLFPEADKV RTMLVRKIQE ESLRTYLFTY 900
  901 SSVYDSISME TLSDMFELDL PTVHSIISKM IINEELMASL DQPTQTVVMH RTEPTAQQNL 960
  961 ALQLAEKLGS LVENNERVFD HKQGTYGGYF RDQKDGYRKN EGYMRRGGYR QQQSQTAY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle