YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109465907, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCHVIVTCRS MLWTLLSIVV AFAELVAFMS ADWLIGKAKT RSGDEQAGMD SEPHYLGILC  60
   61 LRTPAMQQVP RDTLCGTYAK SFGEIASGFW QATAIFLAMG IFILCVVALV SVFTMCVQSI 120
  121 MRKSIFNVCG LLQGIAGLFL ILGLVLYPAG WGCQKAIDCG RYASPYKPGD CSLGWAFYTA 180
  181 TGGTVLTFIC AVFSAQAEIA TSSDKVQEEI EEGKNLICLL

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	31	0.89
Non-Cytoplasmic	32	91	0.96
Transmembrane Helix	92	116	0.89
Cytoplasmic	117	124	0.87
Transmembrane Helix	125	147	0.90
Non-Cytoplasmic	148	173	0.93
Transmembrane Helix	174	195	0.91
Cytoplasmic	196	220	0.95