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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109467917
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSDSRAVF DCHAVSRTLI RKGYPEAPPP TLHLRTASLR CSQPSGTCLN GGRCEVANGT  60
   61 EACVCSGAFV GQRCQDPSPC LSTPCKNAGT CYVVDHGGIV DYACSCPLGF SGPLCLTPLA 120
  121 NACLANPCRN GGTCDLLTLT EYKCRCPPGW SGKSCQQADP CASNPCANGG QCLPFESSYI 180
  181 CGCPPGFHGP TCRQDVNECS QNPGLCRHGG TCHNEIGSYR CACRATHTGP HCELPYVPCS 240
  241 PSPCQNGGTC RPTGDTTHEC ACLPGFAGQN CEENVDDCPG NNCKNGGACV DGVNTYNCRC 300
  301 PPEWTGQYCT EDVDECQLMP NACQNGGTCH NSHGGYNCVC VNGWTGEDCS ENIDDCASAA 360
  361 CFQGATCHDR VASFYCECPH GRTGLLCHLN DACISNPCNE GSNCDTNPVN GKAICTCPSG 420
  421 YTGPACSQDV DECALGANPC EHAGKCLNTL GSFECQCLQG YTGPRCEIDV NECISNPCQN 480
  481 DATCLDQIGE FQCICMPGYE GVYCEINTDE CASSPCLHNG RCVDKINEFL CQCPKGFSGH 540
  541 LCQYDVDECA STPCKNGAKC LDGPNTYTCV CTEGYTGTHC EVDIDECDPD PCHYGLCKDG 600
  601 VATFTCLCQP GYTGHHCETN INECHSQPCR HGGTCQDRDN YYLCLCLKGT TGPNCEINLD 660
  661 DCASNPCDSG TCLDKIDGYE CACEPGYTGS MCNVNIDECA GSPCHNGGTC EDGIAGFTCR 720
  721 CPEGYHDPTC LSEVNECNSN PCIHGACRDG LNGYKCDCAP GWSGTNCDIN NNECESNPCV 780
  781 NGGTCKDMTS GYVCTCREGF SGPNCQTNIN ECASNPCLNQ GTCIDDVAGY KCNCPLPYTG 840
  841 ATCEVVLAPC ATSPCKNSGV CKESEDYESF SCVCPTGWQG QTCEIDINEC VKSPCRHGAS 900
  901 CQNTNGSYRC LCQAGYTGRN CESDIDDCRP NPCHNGGSCT DGVNAAFCDC LPGFQGAFCE 960
  961 EDINECASNP CQNGANCTDC VDSYTCTCPT GFNGIHCENN TPDCTESSCF NGGTCVDGIN1020
 1021 SFTCLCPPGF TGSYCQYDVN ECDSRPCLHG GTCQDSYGTY KCTCPQGYTG LNCQNLVRWC1080
 1081 DSAPCKNGGK CWQTNTQYHC ECRSGWTGFN CDVLSVSCEV AAQKRGIDVT LLCQHGGLCV1140
 1141 DEEDKHYCHC QAGYTGSYCE DEVDECSPNP CQNGATCTDY LGGFSCKCVA GYHGSNCSEE1200
 1201 INECLSQPCQ NGGTCIDLTN TYKCSCPRGT QGVHCEINVD DCHPPLDPAS RSPKCFNNGT1260
 1261 CVDQVGGYTC TCPPGFVGER CEGDVNECLS NPCDPRGTQN CVQRVNDFHC ECRAGHTGRR1320
 1321 CESVINGCRG KPCRNGGVCA VASNTARGFI CRCPAGFEGA TCENDARTCG SLRCLNGGTC1380
 1381 ISGPRSPTCL CLGSFTGPEC QFPASSPCVG SNPCYNQGTC EPTSESPFYR CLCPAKFNGL1440
 1441 LCHILDYSFT GGAGRDIPPP QIEEACELPE CQEDAGNKVC NLQCNNHACG WDGGDCSLNF1500
 1501 NDPWKNCTQS LQCWKYFSDG HCDSQCNSAG CLFDGFDCQL TEGQCNPLYD QYCKDHFSDG1560
 1561 HCDQGCNSAE CEWDGLDCAE HVPERLAAGT LVLVVLLPPD QLRNNSFHFL RELSHVLHTN1620
 1621 VVFKRDAQGQ QMIFPYYGRE EELRKHPIKR SAVGWATTSL LPGTNGGRQR RELDPMDIHG1680
 1681 SIVYLEIDNR QCVQSSSQCF QSATDVAAFL GALASLGSLN IPYKIEAVKS ETVEPPLPSQ1740
 1741 LHLMYVAAAA FVLLFFVGCG VLLSRKRRRQ HGQLWFPEGF KVSEASKKKR REPLGEDSVG1800
 1801 LKPLKNASDG ALMDDNQNEW GDEDLETKKF RFEEPVVLPD LDDQTDHRQW TQQHLDAADL1860
 1861 RVSAMAPTPP QGEVDADCMD VNVRGPDGFT PLMIASCSGG GLETGNSEEE EDAPAVISDF1920
 1921 IYQGASLHNQ TDRTGETALH LAARYSRSDA AKRLLEASAD ANIQDNMGRT PLHAAVSADA1980
 1981 QGVFQILLRN RATDLDARMH DGTTPLILAA RLAVEGMLED LINSHADVNA VDDLGKSALH2040
 2041 WAAAVNNVDA AVVLLKNGAN KDMQNNKEET PLFLAAREGS YETAKVLLDH FANRDITDHM2100
 2101 DRLPRDIAQE RMHHDIVRLL DEYNLVRSPQ LHGTALGGTP TLSPTLCSPN GYLGNLKSAT2160
 2161 QGKKARKPST KGLACSSKEA KDLKARRKKS QDGKGCLLDS SSMLSPVDSL ESPHGYLSDV2220
 2221 ASPPLLPSPF QQSPSMPLSH LPGMPDTHLG ISHLNVAAKP EMAALAGGSR LAFEPPPPRL2280
 2281 SHLPVASSAS TVLSTNGTGA MNFTVGAPAS LNGQCEWLPR LQNGMVPSQY NPLRPGVTPG2340
 2341 TLSTQAAGLQ HGMMGPIHSS LSTNTLSPII YQGLPNTRLA TQPHLVQTQQ VQPQNLQIQP2400
 2401 QNLQPPSQPH LSVSSAANGH LGRSFLSGEP SQADVQPLGP SSLPVHTILP QESQALPTSL2460
 2461 PSSMVPPMTT TQFLTPPSQH SYSSSPVDNT PSHQLQVPEH PFLTPSPESP DQWSSSSPHS2520
 2521 NISDWSEGIS SPPTSMPSQI THIPEAFK

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