YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109468376
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.59
Transmembrane Helix	39	62	0.88
Non-Cytoplasmic	63	99	0.96
Transmembrane Helix	100	121	0.92
Cytoplasmic	122	129	0.86
Transmembrane Helix	130	149	0.95
Non-Cytoplasmic	150	157	0.80
Transmembrane Helix	158	179	0.93
Cytoplasmic	180	189	0.76
Transmembrane Helix	190	209	0.93
Non-Cytoplasmic	210	216	0.72
Transmembrane Helix	217	239	0.89
Cytoplasmic	240	325	0.97
Transmembrane Helix	326	345	0.89
Non-Cytoplasmic	346	381	0.88
Transmembrane Helix	382	400	0.91
Cytoplasmic	401	447	0.95
Transmembrane Helix	448	468	0.93
Non-Cytoplasmic	469	476	0.76
Transmembrane Helix	477	500	0.83
Cytoplasmic	501	507	0.73
Transmembrane Helix	508	531	0.83
Non-Cytoplasmic	532	538	0.82
Transmembrane Helix	539	562	0.89
Cytoplasmic	563	588	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYPSQGPLG SPSLSALFLC RVSATMAPTL KQAYRRRWWM ACTAVVENLF FSAVLLGWAS  60
   61 LLIMLKKEGF YSSLCPAENR TNTTQDEQQW ISCDQQEEML NLGFTIGSFL LSATTLPLGI 120
  121 LMDRFGPRPL RLVGSACFAA SCTLMALASR DTEVLSPLIF LALSLNGFAG ICLTFTSLTL 180
  181 PNMFGNLRST FMALMIGSYA SSAITFPGIK LIYDAGVSFM VIMFTWSGLA CLIFLNCALN 240
  241 WPAEAFPAPE EVDYTKKIKL IGLALDHKVT GDRFYTHVTI VGQRLSQKTP SLEEGTDGFI 300
  301 SSSDIPGTSE KTPEKSVPFR KSLCSPIFLW SLVTMGMTQL RVIFYMGAMN KILEFLVTGG 360
  361 KECETNEQRQ KVEETVEFYS SIFGVMQLLC LLTCPLIGYI MDWRIKDCVD DPTEGTLNES 420
  421 ASFGDARDGT ITKFTKPRYR KIQKLTNAIN AFTLTNILLV GFGITCLIKN LHLQLVAFVL 480
  481 HTVVRGFFHS ACGGLYAAVF PSNHFGTLTG LQSLISAVFA LLQQLLFMAM VGPLHGDPFW 540
  541 VNLGLLILSL LGFLLPSYLY YYRSRLEREY ATNLLDPQKV LNTSKVAT