YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109462570
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVFNNSEVK YFLLIGIPGL EYAHAWISIP ICLMYLIAIV GNCTIIFVIK TEPSLHEPMY  60
   61 YFLTMLAVSD MGLSFRTTQP VPXTPXVCPV SGSLRPRTQT SIVGIEQGHR QCFFGPLSCH 120
  121 SQPPXGTVLS SLAVGLLKXG XFXPSGAQLW CFHSLSHXGN XNTVKRICSL THTAFIRTSX 180
  181 NWPALITRSI SSMVSLRLSV LCWTLPXFLC LTCXSXRQFS VLHLWXKGXK PXIPVSPTSV 240
  241 LCSSSMSPSS PWLPYIALPS TKAPYLXSLL QICFCWCHPX XTPLCTVXRL DKSGRRSWES 300
  301 WLTYVXD

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.72
Transmembrane Helix	23	49	0.84
Cytoplasmic	50	193	0.55
Transmembrane Helix	194	216	0.66
Non-Cytoplasmic	217	267	0.62
Transmembrane Helix	268	287	0.38
Cytoplasmic	288	307	0.59