YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109462574
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSCNNSIPQ PLIFILTGIP GLECSHGWFS TSFFLIFVIT IIGNGTILNI IWIEKTLHEP  60
   61 MFLLLATLSV VDLCLVTVTV PRIYCAYMAV VMIACGDISN HVVYGLMVIV ASVGIDLLFV 120
  121 ILSYTLILCA VFRIPSGQAR RKALSTCGSH LCVIGLFYSP VVFSVLSQIL GYHMAPYLQI 180
  181 IIDNLYFLVP PMVNPLIYAA XTKQMRERVL RVLTCQRN

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.47
Transmembrane Helix	31	53	0.88
Cytoplasmic	54	60	0.79
Transmembrane Helix	61	84	0.85
Non-Cytoplasmic	85	105	0.69
Transmembrane Helix	106	132	0.83
Cytoplasmic	133	146	0.85
Transmembrane Helix	147	170	0.85
Non-Cytoplasmic	171	179	0.79
Transmembrane Helix	180	201	0.85
Cytoplasmic	202	218	0.92