YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109471287
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCWCEQPQE QKSSEKIQKS VPGSASFADS RVPQLFSLSR PVGLPLHGPV CQRSFRSPPP  60
   61 RPGRARTLRS PSGSRVVQRP RNDGVAALTG AGGCRAPRAG MAGQFRSYVW DPLLILSQIV 120
  121 LMQTVYYGSL GLWLALVDAL VRSSPSLDQM FDAEILGFST PPGRLSMMSF VLNALTCALG 180
  181 LLYFIRRGKQ CLDFTVTVHF FHLLGCWLYS SRFPSALTWW LVQAVCIALM AVIGEYLCMR 240
  241 TELKEIPLSS APKSNV

Type	Start	End	Confidence
Cytoplasmic	1	107	0.98
Transmembrane Helix	108	130	0.75
Non-Cytoplasmic	131	164	0.85
Transmembrane Helix	165	185	0.94
Cytoplasmic	186	191	0.88
Transmembrane Helix	192	211	0.91
Non-Cytoplasmic	212	218	0.75
Transmembrane Helix	219	239	0.94
Cytoplasmic	240	256	0.97