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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109477199, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METGAGPHPL RLFVCLMPLC LALLLGPGRP GTAEEVTLLD SKASQAELGW TALPSTGWEE  60
   61 ISGVDEHDRP IRTYQVCNVL EPNQDNWLQT GWISRGRGQR IFVELQFTLR DCSSIPGATG 120
  121 TCKETFNAYY LETEADLGRG HPHLGGNRPR KIDTIAADES FTQGDLGERK MKLNTEVREI 180
  181 GPLSRQGFHL AFQDVGACVA LVSVRVYYKQ CRATVRGLAA FPATAAESAF STLVEVAGTC 240
  241 VAHSEGEPSS PPRMHCGADG EWLVPVGRCS CSAGFQERGD ICEACPPGFY KVSPRRPLCS 300
  301 PCPEHSLALE NASTFCVCQD TYARSPTDPP SASCTRPPSA PRDLQYSLSR SPLALRLRWL 360
  361 PPEDSGGRSD VTYSLLCLRC GRDGPAGACQ PCGPRVAFVP RQAGLRERAA TLLHLRPGAR 420
  421 YTVRVAALNG VSGPAAAAGA TYAQVTVSTG PGAPWEEDEI RRDRVEPQSV SLSWREPVPA 480
  481 GASGTNRTEY EIRYYEKGLG DRFQSWVHLG SPLATQVGGQ PRLRDSPFQN RNQNLTKSWE 540
  541 TNPSYLDSCL LPELGCIAPG SRDQSPAVVV TVVTISALLV LGSVMSVLAI WRRPCDGKGS 600
  601 GNAHDEEELY FHFKVPTRRT FLDPQSCGDP LQAVHLFAKE LDAKSVTLEK SLGAGRFGDL 660
  661 CCGCLQLPGR QELPVAVHTL REGCSDSQKL SFLAEALTLG QFDHSHIVRL EGVVTRGNPL 720
  721 MIVTEYMNLG ALDDFLRHHE AELVTAQLMG LLPGLASAMK YLSEMGYVHR GLAARRVLLS 780
  781 SGLICKISGF GRGPRDRAEA VYTTMSGRSP ALWAAPETLQ FGHFSSASDV WSFGIVMWEV 840
  841 MAFGERPYWD MSGQDVIKAV EDGFRLPPPR NCPSQLHRLM LECWQKDPGE RPRFSQIHSI 900
  901 LSKMGQEPEP SKCASTTCLR PPTPLADRAF SAFPSFGSVG AWLEALDLCR YKDNFSAAGY 960
  961 GSLEAVTEMT AQDLGSLGIS SAEHREALLS GISALQTRVL QLQGQGVQV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle