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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109463292, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.40
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQWGAGTGRG EGAAAGDPVT PGAESWGDPR TKAPGAEQRG AGGWAQPSSR LCRSLCWTQG  60
   61 VRSEHIMQDT QDSDISLEGL TREGAPADRE CQRGPETIVH EAQDAGTPNS DATGAVDGER 120
  121 EATMRVPEKY STLPAEDRSV HIVNICAIED LGYLPSEGTL LNSLSVDPDA ECKYGLYFRD 180
  181 GKRKVDYILV YHHKRASGSR TLARRGLQND MVLGTRSVRQ DQPLPGKGSP VDVGSPEAPM 240
  241 DYHEDDKRFR REEYEGNLLE AGLELERDED TKIHGVGFVK IHAPWHVLCR EAEFLKLKMP 300
  301 TKKVYHISET RGLLKTINSV LQKITDPIQP KVAEHRPQTT KRLSYPFSRE KQHLFDLTDR 360
  361 DSFFDSKTRS TIVYEILKRT TCTKAKYSMG ITSLLANGVY SAAYPLHDGD YEGDNVEFND 420
  421 RKLLYEEWAS YGVFYKYQPI DLVRKYFGEK VGLYFAWLGA YTQMLIPASI VGVIVFLYGC 480
  481 ATVDENIPSM EMCDQRHNIT MCPLCDKTCS YWKMSSACAT ARASHLFDNP ATVFFSVFMA 540
  541 LWAATFMEHW KRKQMRLNYR WDLTGFEEEE EAVKDHPRAE YEARVLEKSL RKESRNKETD 600
  601 KVKLTWRDRF PAYFTNLVSI IFMIAVTFAI VLGVIIYRIS TAAALAMNSS PSVRSNIRVT 660
  661 VTATAVIINL VVIILLDEVY GCIARWLTKI EVPKTEKSFE ERLTFKAFLL KFVNSYTPIF 720
  721 YVAFFKGRFV GRPGDYVYIF RSFRMEECAP GGCLMELCIQ LSIIMLGKQL IQNNLFEIGI 780
  781 PKMKKFIRYL KLRRQSPSDR EEYIKRKQRY EVDFNLEPFA GLTPEYMEMI IQFGFVTLFV 840
  841 ASFPLAPLFA LLNNIIEIRL DAKKFVTELR RPVAIRAKDI GIWYNILRGV GKLAVIINAF 900
  901 VISFTSDFIP RLVYLYMYSQ NGTMHGFVNH TLSSFNVSDF QNGTAPNDPL DLGYEVQICR 960
  961 YKDYREPPWS EHKYDISKDF WAVLAARLAF VIVFQNLVMF MSDFVDWVIP DIPKDISQQI1020
 1021 HKEKVLMVEL FMREEQGKQQ LLDTWMEKEK PRDVPCNNHS PTAHPEAGDS SPVPSYEYHG1080
 1081 GAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle