YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109479537
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	216	0.93
Transmembrane Helix	217	240	0.84
Non-Cytoplasmic	241	246	0.83
Transmembrane Helix	247	270	0.75
Cytoplasmic	271	290	0.89
Transmembrane Helix	291	313	0.83
Non-Cytoplasmic	314	319	0.74
Transmembrane Helix	320	340	0.91
Cytoplasmic	341	345	0.81
Transmembrane Helix	346	367	0.89
Non-Cytoplasmic	368	378	0.82
Transmembrane Helix	379	398	0.94
Cytoplasmic	399	410	0.70
Transmembrane Helix	411	430	0.89
Non-Cytoplasmic	431	445	0.84
Transmembrane Helix	446	468	0.85
Cytoplasmic	469	504	0.94
Transmembrane Helix	505	526	0.91
Non-Cytoplasmic	527	530	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRRPDDIEN CTEFDLISLG HRKAGLRGTA PGCARGAGLR ERAGRGARQG RGARSAGRAR  60
   61 RPLRPVGAVA GSLERVELGT VAAVAGGERV AGSIPEWPAT MSLGQRLALL AIRLQEPQRV 120
  121 ASFQRLCGVE VPLGSPAAGE DAETEVRGAP GDPRRRPRQS GADGSPAKPD CCGAPNGVRN 180
  181 GLAAEPGPTG PRRAGSLRRN SLTGEEGELA KVSNLPLYYL FCFGTELGNE LFYIIFFPFW 240
  241 IWNLDPFVGR RLVIIWVLVM YLGQCTKDII RWPRPASPPV IKLEIFYNSE YSMPSTHAMS 300
  301 GTAIPIAMIL LTYGRWQYPL IYGLILIPCW SSLVCLSRIY MGMHSILDVI AGFLYTILIL 360
  361 IIFYPLVDLI DNFNQTYKYA PLIIIGLHLI LGIFSFTLDT WSTSRGDTAE ILGSGAGIAC 420
  421 GSHAAYNLGI SLDPSLHTLP LAIPPLTVTL FGKAILRVVI GMLLVLFVRD IMKKVTIPLA 480
  481 CKLFGIPCHD LRQARQHMEV ELPYRYITYG TVGFSITFLI PYIFSFIGIS