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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109480433
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKLLQRQT YTCLSHRYGL YVCFVGVVVT IVSAFQFGEV VLEWSRDQYH VLFDSYRDNI  60
   61 AGKSFQNRLC LPMPIDVVYT WVNGTDLELL KELQQVREHM EEEQKAMREI LGKNTTEPTK 120
  121 KSERQLECLL THCIKVPMLV LDPPLPANCT LKDLPALYPS FHAASDMFNI AKPKNPSTNV 180
  181 SVVVFDTTKD VEDAHAGLFK GSSKQTVWRA YLTTDKEVPG LVLMQDLAFL SGFPPTFKET 240
  241 IQLKTKLPEN LSSKIKLLQL YSEASVALLK LNNPKGFPEL NKQTKKNMSI SGKELAISPA 300
  301 YLLWDLSAIS QSKQDEDVSA SRFEDNEELR YSLRSIERHA PWVRNIFIVT NGQIPSWLNL 360
  361 DNPRVTIVTH QDIFQNLSHL PTFSSPAIES HIHRIEGLSQ KFIYLNDDVM FGKDVWPDDF 420
  421 YSHSKGQKVY LTWPVPNCAE GCPGSWIKDG YCDKACNNSA CDWDGGDCSG NSAGSRYVAG 480
  481 GGGTGNIGVG QRWQFGGGIN TISYCNQGCA NSWLADKFCD QACNVLSCGF DAGDCGQDHF 540
  541 HELYKVTLLP NQTHYVVPKG EYLSYFSFAN IAKRGVEGTY SDNPIVRHAS IANKWKTIHL 600
  601 IMHSGMNATT IYFNLTLQNS NDEEFKIQIA VEVDTREVPK PNSTTQKTYD NLVSPVTPLP 660
  661 QADVPFEDVP KEKRFPRVRR PDVNATGKVQ EEVKIPRVNI SLLPKEAQVR LSNLDSQLER 720
  721 GDITLKGYNL SKSALLRPFL RNSLDTKGKP QAGTDETKDN LEVPQEDPSH QRPRGFAAAR 780
  781 RPERWTTPAE TATVNGRDHG LNPPPTQPVP KENLSPLIIP PEGRMPKEGD RDRAEGNADS 840
  841 HVPVNELVPG RRLQQHIPSY PGFLPWEKNK YFQDLLDEEE SLKKQLAYFT DSRHAGRQLK 900
  901 DTFADSLRYV NKILNSKFGF TSRKVPAHMP HMIDRIVMQE LQDMFPEEFD KTSFHKVRHS 960
  961 EDMQFAFSYF YYLMSAVQPL NLSQVFDEVD TDQSGVLSDR EIRTLATRVH DLPLSLQDLT1020
 1021 GLEHMLINCS KLLPANITQL SNIPPTQEAY YDPNLPPVTK SLVTNCKPVT DKIHKAYKDK1080
 1081 NKYRFEIMGE EEIAFKMIRT NVSHVVGQLD DIRKNPRKFV CLNDNIDHNH KDAQTVKAVL1140
 1141 RDFYESMFPI PSQFELPREY RNRFLHMHEL QEWRAYRDKL KFWTHCVLAT LIIFTVFSFF1200
 1201 AEQIIALKRK IFPRRRTHKE ASPDQIRV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle