YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109481473
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILSIRFVV AKPSEMRIIT SVTYFIFLGL TDDPELQVVI FFFLFLTYVL SITGNLTIIT  60
   61 LTLLDSHLKT PMYFFLRNFS FLEISFTSVC NPRFLVSILT KDKYISYNAC AAQLFFYISL 120
  121 GSTEFFLLAS MSYDRYVAIC KPLNYTTIIS NKICHQLIIS SWLAGFLVIF PPLAMGLELD 180
  181 FCDSNIIDHF TCDSAPLLQI SCTDTSTLEL MSLILALVTL MTTLMLIILS YTCILRTILK 240
  241 FPSTKQREKA FSTCSSHMIV VSISYGSCIF MYVKTSAKAG VALTKGVAML NTSVAPMLKP 300
  301 FIYTLRNQQV KQAFSDLMRR LYYKEENEVK VVIMI

Type	Start	End	Confidence
Cytoplasmic	1	12	0.82
Transmembrane Helix	13	31	0.79
Non-Cytoplasmic	32	38	0.79
Transmembrane Helix	39	63	0.88
Cytoplasmic	64	73	0.85
Transmembrane Helix	74	96	0.73
Non-Cytoplasmic	97	110	0.71
Transmembrane Helix	111	133	0.73
Cytoplasmic	134	152	0.91
Transmembrane Helix	153	175	0.85
Non-Cytoplasmic	176	212	0.95
Transmembrane Helix	213	235	0.92
Cytoplasmic	236	252	0.89
Transmembrane Helix	253	273	0.80
Non-Cytoplasmic	274	280	0.72
Transmembrane Helix	281	303	0.57
Cytoplasmic	304	335	0.75