YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109482981
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPGATAWT NVQKGIHSPQ AFHSLHTSAD SHVCVPHFCV TKLFTVSRQV YKTPSGGNQG  60
   61 SSSWSTVEFS SIRKNDVARS GAASGRVYGI WSGALVFGHR ILYSLGSSGP ISISTAVGSF 120
  121 GGVPGSYGTG SGDSFSGGRG MGGSIGRTGG FGLAGVFNRS RVFDPGEIQE VSIKQSLLHP 180
  181 LSVKTDPRLK MKVKKCEPIE ALNSKLVCSL DEVQKEPHYT PAFKRVDHER DPQTFLCASW 240
  241 NKRTRPWRLH QGPNSITSTN SLGSHFESFV NSQLGDLDDI TLERSQLDSE LRNVQGSVE

Type	Start	End	Confidence
Cytoplasmic	1	86	0.70
Transmembrane Helix	87	103	0.48
Non-Cytoplasmic	104	299	0.53