YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109485505, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDHWAAPFP TLGNPVKWLS LSRQLVRVLD QRSFTFANIC LYPPREKYQA ACLDHAVLGS  60
   61 EQGQPPMDNY TVAPEDEYDV LIEDDLDNSG TDQVPTPEFL SAQQALHFCC TVFAVGLLDN 120
  121 TLAVFILAKY RGLRNPGNIY FLNLALSNLC FLLPLPFWAH TAAHGESPGN ETCKVLVGLH 180
  181 SMGLYSETLC NILLLVQGYR VFSQGRLSSI FTTVSGGIVT CVLAWAVAAA LSLPEAVFYE 240
  241 PRMERQKHKC GFGKPHFLTI EAPIWKYVLT SKMNILVLVF PLLVFIFCCR QMRTAQNFRE 300
  301 RQCDLRKAAL VITGVFLLMW APYNVVLFLS ALQEHLSLQD DKSSYYLDAS TQVTQLIATT 360
  361 HCCVNPLLYL LLDKAFRSYL CSLFPRCNDL PFQSGRDSQQ ETPREGHSRP IELYGTLPQR 420
  421 QDI

Type	Start	End	Confidence
Non-Cytoplasmic	1	104	0.74
Transmembrane Helix	105	127	0.72
Cytoplasmic	128	138	0.86
Transmembrane Helix	139	160	0.92
Non-Cytoplasmic	161	176	0.88
Transmembrane Helix	177	199	0.81
Cytoplasmic	200	209	0.77
Transmembrane Helix	210	231	0.93
Non-Cytoplasmic	232	267	0.96
Transmembrane Helix	268	289	0.89
Cytoplasmic	290	307	0.91
Transmembrane Helix	308	329	0.91
Non-Cytoplasmic	330	423	0.78