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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109485944, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVIHVLPFT GGQERRRRVR RAAGRGQRRG RSNMAPGGGG GRRDGWPARG RLLLAALLLL  60
   61 LWTRAASGQS SPQQSVILGM RLASCNKSCG MNPDGIIFVS EGSTVNLRLY GHRLGEISSN 120
  121 LISFTEVDDA ETVHNSTNCL ELTKDLVVQR LVNVSRGNTS GMLVVITKFL RRSENMKLYA 180
  181 LCTRTRADGP WLKWTDKDSL LFMVEEHGRF LPLWLHILLV LVLLVLSGIF SGLNLGLMAL 240
  241 DPMELRIVQN CGTEKERRYA RKIEPIRRKG NYLLCSLLLG NVLVNTSLTI LLDNLIGSGI 300
  301 MAVASSTIGI VIFGEILPQA LCSRHGLAVG ANTIVLTKIF MLLTFPLSFP ISKLLDFVLG 360
  361 QEIRTVYNRE KLMEMLKVTE PYNDLVKEEL NMIQGALELR TKTVEDIMTQ LHDCFMIRSD 420
  421 AILDFNTMSE IMESGYTRIP VFEDEQSNIV DILYVKDLAF VDPDDCTPLK TITRFYNHPV 480
  481 HFVFHDTKLD AMLEEFKKGK SHLAIVQKVN NEGEGDPFYE VLGLVTLEDV IEEIIKSEIL 540
  541 DESDTYTDNR TRKRVSMKNK RDFSAFKDAD NELKVKISPQ LLLAAHRFLA TEVPQFSPSL 600
  601 MSEKILLRLL KYPDVIQELR FDEHNKHCTR HYLYTRNKPA DCFILILQGK VEVEAGKENM 660
  661 KFETGAFSYY GTMALSLAPP DRSPAHPTPL SRSASLSYPD RNTDMTPSSL AGSNQFGSCI 720
  721 LGQYVSDFSV RALTDLQYIK VTRQQYQNGL LASRMDNSPQ LTLDGCATCT ENLSERPELP 780
  781 VVDETTTLLN ERNLLLHRAS QEGTI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle