YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109488728
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLTFKTGA SLFLPVVYQE RQLHLAEPTL RVAMDGIGWA AGGWGHRGRG PQPGQTQDRG  60
   61 GAQPYCLTGL AGAKAPRGAG PVEKPWMETT NAPSVFYRPL VRRIGPLMSP QLFPDTFICQ 120
  121 GVLSAQFLAL TCPSFNSATG PHIPQHSRIH STRVMRADTY RDLCETILDV TRPKDEPGSP 180
  181 ARLGNAVPSG PGYWCSVWLR EAKTKNHVKG AWNREASACP TPRPRTAWER EGRQSARPPP 240
  241 VCGSRPMRSD RGRSFVVEPR PPGARRPRPC PPPPAPGGPR GAPRGLLKRH AHSARGTPPG 300
  301 APVPEKGRGV GALAQAAAGA DDEAGLHVSA LGPHPPAAHL RSLKSLEPED EVEDDPKVTL 360
  361 EAKELWDQFH KLGTEMVITK SGRRMFPPFK VRVSGLDKKA KYILLMDIVA ADDCRYKFHN 420
  421 SRWMVAGKAD PEMPKRMYIH PDSPATGEQW MAKPVAFHKL KLTNNISDKH GFTILNSMHK 480
  481 YQPRFHIVRA NDILKLPYST FRTYVFPETD FIAVTAYQND KITQLKIDNN PFAKGFRDTG 540
  541 NGRREKRKQL TLPTLRLYEE HCKPERDGAE SDASSCDPPP AREPPPSPSA APSPLRLHRA 600
  601 RAEEKPCAAD SDPEPERSGE ERAAAPLGRS SSRDASPARL TEPERSRERR SPERGSKEPT 660
  661 EGGGDGPFSL RSLEKERAEA RRKDEGRKDV GEGKEPSLAP LVVQTDSASP LGAGHLPGLA 720
  721 FSSHLHGQQF FGPLGAGQPL FLHPGQFAMG PGAFSAMGMG HLLASVAGGG GNSGGAAPGT 780
  781 AAGLDAGGLG PAASAASTAT PFPFHLSQHM LASQGIPMPT FGGLFPYPYT YMAAAAAAAS 840
  841 ALPATSAAAA AAAAAGSLSR SPFLGSARPR LRFSPYQIPV TIPPSTSLLT TGLAAESSKG 900
  901 GNSREPSPLP ELALRKVGGP SRGALSPSGS AKEAASELQS IQRLGPGILG CWGRGRHRTP 960
  961 GKAHPAGPSA SAPRFCPPSP RAPPQVFTFC SRGRTKRENN KNATMRSDPH CALCGSRGAG1020
 1021 ALWALKKELR RGHGRPYLAR SCTSATAASQ PGRVQSREPP RRRRRRLAQA GPGGAAPSRS1080
 1081 PRHPGP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle