YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109491556
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.72
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLTFKTGA SLFLPVVYQE RQLHLAEPTL RVAMDGIGWA AGGWGHRGRG PQPGQTQDRG  60
   61 GAQPYCLTGL AGAKAPRGAG PVEKPWMETT NAPSVFYRPL VRRIGPLMSP QLFPDTFICQ 120
  121 GVLSAQFLAL TCPSFNSATG PHIPQHSRIH STRVMRADTY RDLCETILDV TRPKDEPGSP 180
  181 ARLGNAVPSG PGYWCSVWLR EAKTKNHVKG AWNREASACP TPRPRTAWER EGRQSARPPP 240
  241 VCGSRPMRSD RGRSFVVEPR TPGARRPRPC PPPPAPGGPR AAAHLRSLKS LEPEDEVEDD 300
  301 PKVTLEAKEL WDQFHKLGTE MVITKSGRRM FPPFKVRVSG LDKKAKYILL MDIVAADDCR 360
  361 YKFHNSRWMV AGKADPEMPK RMYIHPDSPA TGEQWMAKPV AFHKLKLTNN ISDKHGFTIL 420
  421 NSMHKYQPRF HIVRANDILK LPYSTFRTYV FPETDFIAVT AYQNDKITQL KIDNNPFAKG 480
  481 FRDTGNGRRE KRKQLTLPTL RLYEEHCKPE RDGAESDASS CDPPPAREPP PSPSAAPSPL 540
  541 RLHRARAEEK PCAADSDPEP ERSGEERAAA PLGRSSSRDA SPARLTEPER SRERRSPERG 600
  601 SKEPTEGGGD GPFSLRSLEK ERAEARRKDE GRKDVGEGKE PSLAPLVVQT DSASPLGAGH 660
  661 LPGLAFSSHL HGQQFFGPLG AGQPLFLHPG QFAMGPGAFS AMGMGHLLAS VAGGGGNSGG 720
  721 AAPGTAAGLD AGGLGPAASA ASTATPFPFH LSQHMLASQG IPMPTFGGLF PYPYTYMAAA 780
  781 AAAASALPAT SAAAAAAAAA GSLSRSPFLG SARPRLRFSP YQIPVTIPPS TSLLTTGLAA 840
  841 ESSKGGNSRE PSPLPELALR KVGGPSRGAL SPSGSAKEAA SELQSIQRLG PGILGCWGRG 900
  901 RHRTPGKAHP AGPSASAPRF CPPSPRAPPQ VFTFCSRGRT KRENNKNATM RSDPHCALCG 960
  961 SRGAGALWAL KKELRRGHGR PYLARSCTSA TAASQPGRVQ SREPPRRRRR RLAQAGPGGA1020
 1021 APSRSPRHPG P

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle