YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109490785
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDVTCFLFP VHLISFCLLP IVAQTAAASD EVSDLHGIYV KASRSLPFSA PSAAWALSLM  60
   61 DMMYISVTVP KMLMDQVLGN HRISAAACGM QMFLYLTLAG SEFLLLAAMS YDRYVAICHP 120
  121 LRYHVLMNHR VCLLLISSCW LLGSLDGFMF TPVTMTFPFC GSRKIYHFYC EVLTVTKLSC 180
  181 SDTWLYETFM YVCCVVMLLI PVTVISGSYS SILLTVLRMN STEGRKKALA TCSSHMTVVI 240
  241 LFYGTAIYNY MLPASLHTPE KDMVVSVFYT ILTPLLNPLI YSFRNKNVTE AMRKWLGLSP 300
  301 LF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.42
Transmembrane Helix	8	28	0.60
Cytoplasmic	29	45	0.70
Transmembrane Helix	46	67	0.72
Non-Cytoplasmic	68	86	0.74
Transmembrane Helix	87	111	0.76
Cytoplasmic	112	130	0.78
Transmembrane Helix	131	149	0.92
Non-Cytoplasmic	150	187	0.93
Transmembrane Helix	188	213	0.84
Cytoplasmic	214	227	0.86
Transmembrane Helix	228	248	0.88
Non-Cytoplasmic	249	264	0.79
Transmembrane Helix	265	283	0.91
Cytoplasmic	284	302	0.89