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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|109497070
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELRALLCWA SLATALEETL LNTKLETADL KWVTYPQAEG QWEELSGLDE EQHSVRTYEV  60
   61 CDMKRPGGQA HWLRTGWVPR RGAVHVYATI RFTMMECLSL PRASRSCKET FTVFYYESEA 120
  121 DTATAHTPAW MENPYIKVDT VAAEHLTRKR PGAEATGKVN IKTLRLGPLS KAGFYLAFQD 180
  181 QGACMALLSL HLFYKKCSRL VTNLTYFPET VPRELVVPVA GSCVANAVPT ASPSPSLYCR 240
  241 EDGQWAEQQV TGCSCAPGYE AAEGNKVCRA CGQGTFKPQI GEEPCLPCPA NSHSNNIGSP 300
  301 VCLCRIGYYR ARSDPRSSPC TTPPSAPRSV VHHLNGSSLR LEWSAPLESG GREDLTYAVR 360
  361 CRECRPGGSC LPCGGDLTFD PGPRDLVEPW VAIRGLRPDV TYTFEVAALN GVSTLATGPP 420
  421 PFEPVNVTTD REVPPAVSDI RVTRSSPSSL ILSWAIPRAP SGAVLDYEVK YHEKGAEGPS 480
  481 SVRFLKTSEN RAELRGLKQG ASYLVQVRAR SEAGYGPFGQ EHHSQTQLDE SESWREQLAL 540
  541 IAGTAVVGVV LVLVVIIIAV LCLRKQSSGR EVEYSDKHGQ YLIGHGTKVY IDPFTYEDPN 600
  601 EAVREFAKEI DVSYVKIEEV IGAGEFGEVC RGRLKAPGKK ESCVAIKTLK GGYTERQRRE 660
  661 FLSEASIMGQ FEHPNIIRLE GVVTNSVPVM ILTEFMENGA LDSFLRNLPE RGWGHGSVLV 720
  721 GMLRGIASGM RYLAEMSYVH RDLAARNILV NSNLVCKVSD FGLSRFLEEN SSDPTYTSSL 780
  781 GGKIPIRWTA PEAIAFRKFT SASDAWSYGI VMWEVMSFGE RPYWDMSNQD VINAIEQDYR 840
  841 LPPPPDCPTS LHQLMLDCWQ KDRNARPRFP QVVSALDKMI RNPASLKIVA RENGGASHPL 900
  901 LDQRQPHYSA FGSVGEWLRA IKMGRYEESF AAAGFGSFEV VSQISAEDLL RIGVTLAGHQ 960
  961 KKILASVQHM KSQAKPGAPG GTGGPTQQF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle