YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109498003
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRTYIVEET VGQYLSSINL QGKPFVSGLL IGQCSSQKDY VILATRTPPK EEQNDNLKHP  60
   61 KSKLDNLDEE WATEHANQVS RMLPGGLVVL GVFIITTLEL ADDFQNAMRR LIFSMEKSMS 120
  121 RKRLWNVTED EVSERVTLHI CSSTKKISCR TYDVHDPKSS ARPADWKYQS RVSASWLSLD 180
  181 CTIHVNIHIP LSATSVTYTL EKNTKSGLTR WAKQIENGVY LINGQVKGND CDLLEGQKKN 240
  241 RGNTQAAAHS FDVRVLTQLL LNSDHRSTAT VQICSGSVNL RGNVRCRAYI HSNRPKVKDA 300
  301 VQAVKRDILN TVADRCEILF EDLLLNETPE KKNYELPQRV FVPLPGSTVM LCDYKFGDES 360
  361 AEEIRDHFSD MLDHEIQIED VEIAEEVNTA CMPSCVNSEA SLTNTNDEQP EQPNKTIGVK 420
  421 IQQNIGVIAA LAVAAFAAGI SFHYFSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	424	0.60
Transmembrane Helix	425	445	0.88
Cytoplasmic	446	447	0.45