YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109500508, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGYGTHHRD VKSWIIALLT ALSLMMAVVT IGLLAHFLVF DIQVNSNSGR RSSNQLNNLQ  60
   61 DMNENLVDEI FIDSALNKRY VKNHIVGLTP EEDDTKADIV MVFQPPSTEQ RTIGKEKTHS 120
  121 ILNQKTRNAR ALPADVSVVQ VNDCGKRAIP LIANRIVSGN PAAKGAWPWQ VSLQRNNIHQ 180
  181 CGGTLIGNMW VVTAAHCFRT NANPRQWTLS FGTTINPPLM KREVRRIIMH EKYRPPARDH 240
  241 DIALVQFSPR VTFSDEVRRI CLPEPSASFP PNSTVYITGF GALYYGGESQ NELREARVQI 300
  301 ISNDVCKQRH VYGNEIKRGM FCAGFLEGIY DACRGDSGGP LVVRDDKDTW YLIGIVSWGD 360
  361 NCGQKNKPGV YTQVTYYRRW IASKTGL

Type	Start	End	Confidence
Cytoplasmic	1	13	0.94
Transmembrane Helix	14	38	0.89
Non-Cytoplasmic	39	387	0.97