YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|209529743, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.79
Transmembrane Helix	17	36	0.88
Non-Cytoplasmic	37	42	0.64
Transmembrane Helix	43	62	0.77
Cytoplasmic	63	82	0.89
Transmembrane Helix	83	105	0.93
Non-Cytoplasmic	106	118	0.85
Transmembrane Helix	119	142	0.85
Cytoplasmic	143	158	0.76
Transmembrane Helix	159	177	0.89
Non-Cytoplasmic	178	183	0.63
Transmembrane Helix	184	202	0.94
Cytoplasmic	203	334	0.97
Transmembrane Helix	335	354	0.89
Non-Cytoplasmic	355	373	0.78
Transmembrane Helix	374	395	0.83
Cytoplasmic	396	403	0.80
Transmembrane Helix	404	437	0.70
Non-Cytoplasmic	438	461	0.49
Transmembrane Helix	462	485	0.86
Cytoplasmic	486	498	0.42
Transmembrane Helix	499	519	0.93
Non-Cytoplasmic	520	541	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQEVLGQA ARLASSGLLL QVLFRLITFV LNAFILRFLS KEIVGVVNVR LTLLYSTTIF  60
   61 LAREAFRRAC LSGGTQRDWT QTLNLLWLTV PLGIFWSLCL GWVWLQLLEV PDPNVVPYYG 120
  121 TGVLLFGLSA VVELLGEPFW VLAQAHMFVK LKVLAESMSV ILRSVLTALL VLWLPHWGLY 180
  181 IFSLAQLLYT AVLVLCYMLY LIKLLRSPES SKQLTLPISK VTQLLPSISR RKAFVNWNEA 240
  241 RLTWSFFKQS FLKQILTEGE RYVMTFLNVL NFGDQGIYDI VNNLGSLVAR LIFQPVEESF 300
  301 YIFFAKVLER EKDASLQKQD DVAVAAAVLE SLLKLALLTG LTVTVFGFAY SQLALDIYGG 360
  361 AMLSSGSGPV LMRCYCLYVL LLAVNGVTEC FTFAAMSKED VDRYNFTMLA LSSSFLVLSY 420
  421 LLTSWCGSVG FIMANCFNMG IRITQSLSFI HHYFQESPHR PLAGLLLSPV LLGVFVLSAG 480
  481 ITSVSEAFLC CERGWPARLA HIAVGTICLG VTLGTAFLTE TKLIHFLRTQ LGRSRLGDKM 540
  541 T