YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109503436, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKQRLCPP EPEDADCYSE SVKFDARSMT ASLPHNTING SSVQEKLKSF KVALVALYLL  60
   61 VFAVLIPVVG IVTAQLVNWE MKNCLVGSAN TSDTSQTLTG KENTSKAEMG FTIAMERMKA 120
  121 LEERVQSISD SKAGLLDTDR FQNFSMATDQ RLNDLLLQLN SLISSVQEHG ESLDAISKSL 180
  181 QSLNTTLLDV QVHTETLNVK VRESTAKQQE DISKLEERVH KVSAEIQSVK EEQEHVEQEV 240
  241 KQEVKVLNNI TNDLRLKDWE HSQTLKNITL IQGPPGPPGE KGDKGLTGQS GPPGVPGARG 300
  301 PPGPKGDQGP VGFPGGRGYP GAPGKAGRSG FPGPKGQKGE KGRAGISTSL KTVRLVDGSG 360
  361 PHEGRVEIFH EGQWGTICDD RWDIRAGQVV CRSLGYQDVL TVHKRAHFGQ GTGPIWLNEV 420
  421 MCFGRESSIE NCKISKWGEL GCSHAEDAGV TCTS

Type	Start	End	Confidence
Cytoplasmic	1	53	0.94
Transmembrane Helix	54	74	0.91
Non-Cytoplasmic	75	454	0.98