YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|109514104
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNYTIITEF VLLGISGNRE LQVVIFVFLL ITYIVSIIGN LTIIMLTLLD SHLKTPMYYF  60
   61 LRNFSFLEIM FTSVSIPRFL ASIITQVKTI SYNNCLAQLF FFIFMGVTEF FLLTTMSYDR 120
  121 YIAICKPLHY TLIMNQKACT LFVLTSWLAG FLTIFPPLML VLKLDFCASN VIDHFCCDYF 180
  181 PLLQLSWLRH LGSXKKYRVL PSCCHVLXPL CCHLQTTALP HHHEXQCATY SSSAPGELCS 240
  241 XLSSLLCSWD SNWISVPQKP YTTFCV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.57
Transmembrane Helix	21	46	0.87
Non-Cytoplasmic	47	58	0.51
Transmembrane Helix	59	82	0.78
Cytoplasmic	83	94	0.38
Transmembrane Helix	95	118	0.82
Non-Cytoplasmic	119	137	0.48
Transmembrane Helix	138	162	0.82
Cytoplasmic	163	266	0.60