YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125536309
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGGKQYGSF GAVTLERKVD LSKGRKKITP ELATGGGGGD IGKRIGHGGG DGGDDDGDDD  60
   61 DYFDDFDDGD EEEGGLFRRR IVIQELFNRE FVDAVMQEWC KTMSNLPAGL RQAYEMGLVS 120
  121 SAQMVRYLAI FARPTHSRSF SRALPGWLSR GLVGRTLADP SFPHKIAFEF MATFFSSVWW 180
  181 EMNIRKERFE QEWDLAVVNA LTASCCNVMV LGLLAPCRSY GSTSRFDFQN AIEKLPNNIF 240
  241 EKSYPLRQFD LQKRISAFFY KAAELSLLGV VAGSIQGGLS KALSARKERR LSVTIPSVST 300
  301 NALGYGAFLG LYANLRYQLL CGLDQYMVRR FDVLGVAIFF STALRLTNIQ IGESSRRTWL 360
  361 GEEADPQYSD RLLRAYKRPV EVAGDQQDSR WFISKDAIVS GLGLLGIKQG GTEAALSKPR 420
  421 RKRVVRKKVA ST

Type	Start	End	Confidence
Cytoplasmic	1	194	0.51
Transmembrane Helix	195	215	0.65
Non-Cytoplasmic	216	257	0.80
Transmembrane Helix	258	279	0.70
Cytoplasmic	280	290	0.76
Transmembrane Helix	291	313	0.78
Non-Cytoplasmic	314	330	0.77
Transmembrane Helix	331	349	0.78
Cytoplasmic	350	432	0.82