YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110289233
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNPGLFTE WPWKKLGSFK YVLLAPWVAH GWYEVATKGW REVDLGYIAI LPSLLLRMLH  60
   61 NQAWITISRL QNARGRRQIV RRGIEFDQVD RERNWDDQII LSGILLYLGA LYVPGGQHLP 120
  121 LWRTDGAGLI ALLHAGPVEF LYYWFHPVIH PFAELVAYEL LFSIPLIACA LTGTASIIAF 180
  181 EMYLIYIDFM NNMGHCNFEL VPSWLFTWFP PLKYLMYTPS FHSLHHTQFR TNYSLFMPFY 240
  241 DYIYNTMDKS SDTLYENSLK NNEEEEAVDV VHLTHLTTLH SIYHMRPGFA EFASRPYVSR 300
  301 WYMRMMWPLS WLSMVLTWTY GSSFTVERNV MKKIRMQSWA IPRYSFHYGL DWEKEAINDL 360
  361 IEKAVCEADK NGAKVVSLGL LNQAHTLNKS GEQYLLKYPK LGARIVDGTS LAAAVVVNSI 420
  421 PQGTDQVILA GNVSKVARAV AQALCKKNIK VTMTNKQDYH LLKPEIPETV ADNLSFSKTG 480
  481 TAKVWLIGDG LDSAEQFRAQ KGTLFIPYSQ FPPKMVRKDS CSYSTTPAMA VPKTLQNVHS 540
  541 CENWLPRRVM SAWRIAGILH ALEGWNEHEC GDKVLDMDKV WSAAIMHGFC PVAQG

Type	Start	End	Confidence
Cytoplasmic	1	16	0.86
Transmembrane Helix	17	36	0.62
Non-Cytoplasmic	37	44	0.62
Transmembrane Helix	45	61	0.66
Cytoplasmic	62	98	0.82
Transmembrane Helix	99	119	0.77
Non-Cytoplasmic	120	125	0.66
Transmembrane Helix	126	146	0.83
Cytoplasmic	147	159	0.59
Transmembrane Helix	160	185	0.83
Non-Cytoplasmic	186	199	0.59
Transmembrane Helix	200	217	0.56
Cytoplasmic	218	300	0.74
Transmembrane Helix	301	321	0.80
Non-Cytoplasmic	322	595	0.78