YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|94536680, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLLKLFLAI LMLSTFTGTA DGYYDYTKFE CIYSTSDYSD MVYLVSLSFN KFVDVKCNST  60
   61 EVKCVGFTEQ GVKFADNYNK DQGILQDLKA SVDTCRHNAE IIDSTVRDKA VKPKVTIKSV 120
  121 KQAEGRHPAM LQCSAYEFYP KKIKLYWLRD GKVITSDVTS TMEMANGNWY YQIHTHLEYT 180
  181 PKSGEKIQCV VEHASSTQPI TKDWNPHISE SDRNKFAIGA SGLVLGIIIA IAGLIYYKKK 240
  241 STGRILVPN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	215	0.99
Transmembrane Helix	216	237	0.95
Cytoplasmic	238	249	0.97