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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|110640572, gi...
Protein type: Transmembrane
Type Confidence: 0.56
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRYKTDNKQ PRFRYSVLAR CVAWANISVQ VLFPLAVTFT PVMAARAQHA VQPRLSMENT  60
   61 TVTADNNVEK NVASLAANAG TFLSSQPDSD ATRNFITGMA TAKANQEIQE WLGKYGTARV 120
  121 KLNVDKNFSL KDSSLEMLYP IYDTPTNMLF TQGAIHRTDD RTQSNIGFGW RHFSENDWMA 180
  181 GVNTFIDHDL SRSHTRIGVG AEYWRDYLKL SANGYIRASG WKTSPDVEDY QERPANGWDI 240
  241 RAEGYLPAWP QLGASLMYEQ YYGDEVGLFG KDKRQKDPHA ITAEVNYTPV PLLTLSAGHK 300
  301 QGKSGENDTR FGLEVNYRIG EPLEKQLDTD SIRERRMLAG SRYDLVERNN NIVLEYRKSE 360
  361 VIRIALPERI EGKGGQTVSL GLVVSKATHG LKNVQWEAPS LLAAGGKITG QGNQWQVTLP 420
  421 AYQAGKDNYY AISAIAYDNK GNASKRVQTE VVISGAGMSA DRTALTLDGQ SRIQMLANGN 480
  481 EQKPLVLSLR DAEGQPVTGM KDQIKTELTF KPAGNIVTRS LKVTKSQAKP TLGEFTETEA 540
  541 GVYQSVFTTG TQSGEATITV SVDGMSKTVT AELRATMMDV ANSTLSANEP SGDVVADGQQ 600
  601 AYTLTLTAVD SEGNPVTGEA SRLRLVPQDT NGVTVGAISE IKPGVYSATV SSTRAGNVVV 660
  661 RAFSEQYQLG TLQQTLKFVA GPLDAAHSSI TLNPDKPVVG GTVTAIWTAK DANDNPVTGL 720
  721 NPDAPSLSGA AAAGSTASGW TDNGDGTWTA QISLGTTAGE LDVMPKLNGQ DAAANAAKVT 780
  781 VVADALSSNQ SKVSVAEDHV KAGESTTVTL VAKDAHGNAI SGLSLSASLT GTASEGATVS 840
  841 SWTEKGDGSY VATLTTGGKT GELRVMPLFN GQPAATEAAQ LTVIAGEMSS ANSTLVADNK 900
  901 TPTVKTTTEL TFTVKDAYGN PVTGLKPDAP VFSGAASTGS ERPSAGNWTE KGNGVYVSTL 960
  961 TLGSAAGQLS VMPRVNGQNA VAQPLVLNVA GDASKAEIRD MTVKVNNQLA NGQSANQITL1020
 1021 TVVDSYGNPL QGQEVTLTLP QGVTSKTGNT VTTNAAGKVD IELMSTVAGE HNISASVNGA1080
 1081 QKTVTVKFNA DASTGQANLQ VDTAVQKVAN GKDAFTLTAT VKDQYGNLLP GAVVVFNLPR1140
 1141 GVKPLADGNI MVNADKEGKA ELKVVSVTAG TYEITASAGN DQPSNAQSVT FVADKTTATI1200
 1201 SSIEVIGNRA VADGKTKQTY KVTVTDANNN LLKDSEVTLT ASPENLVLTP NGTATTNEQG1260
 1261 QAIFTATTTV AATYTLTAKV EQADGQESTK TAESKFVADD KNAELAATSD VHSLVADGVT1320
 1321 TATLTVTLFS ANNPVGGTMW VDIEAPEGVT EADYQFLPSK NDHFASGKIT RTFSTNKPGT1380
 1381 YTFTFNSLTY GGYEMKPVTV TINAVPADTE GAEEK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle