YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110641654, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METQDIIKRS ATNSITPPSQ VRDYKAEVAK LIDVSTCIGC KACQVACSEW NDIRDEVGHC  60
   61 VGVYDNPADL SAKSWTVMRF SETEQNGKLE WLIRKDGCMH CEDPGCLKAC PSAGAIIQYA 120
  121 NGIVDFQSEN CIGCGYCIAG CPFNIPRLNK EDNRVYKCTL CVDRVSVGQE PACVKTCPTG 180
  181 AIHFGTKKEM LELAEQRVAK LKARGYEHAG VYNPEGVGGT HVMYVLHHAD QPELYHGLPK 240
  241 DPKIDTSVNL WKGALKPLAA AGFIATFAGL IFHYIGIGPN KEVDDDEEEH HE

Type	Start	End	Confidence
Cytoplasmic	1	256	0.65
Transmembrane Helix	257	277	0.69
Non-Cytoplasmic	278	292	0.88